MmuINT0044660 @ mm9
Intron Retention
Gene
ENSMUSG00000003555 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88586]
Coordinates
chr19:46743636-46744298:-
Coord C1 exon
chr19:46744212-46744298
Coord A exon
chr19:46743852-46744211
Coord C2 exon
chr19:46743636-46743851
Length
360 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCACTGTCTCTCACCCCAGGAG
3' ss Score
10.33
Exon sequences
Seq C1 exon
ATTTTTCCCAATAAAAACTTGGAAATGATAAAGGAACACACTAAAATTCGAGAAAAAACACTGGTTGAAATGTTTGAAAAATGCAAG
Seq A exon
GTAAGTGATCAAGAAGAGGCGACTGTGAGGCTGGAGGTATCTTGAGAGCAAGGCTGTGATGCATTTTGGACACTGTGAGATTCCCCAGAGCCTAGCAGGGGGGCTGGCACATAATGGGTTAACTGCTAGAAACTGACCTATTAATAAATGGGAGGGGGGAGTGAGTAACTGAAACAGTTCTTAGAGGGACATAGAGGGAGGCACAGGGCTATTCCCTACCTCTACCACCTCACAGGTCCTGCCCAGTCCCTCTCCACTCTCACACACCTTGCTGTGTCTCTGGTATAGGGTGGAGTGTGGCAGGGATGTTGGAAGTGAGGCTCCCTCCTCATCCTCTTCTCTCACTGTCTCTCACCCCAG
Seq C2 exon
GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003555-Cyp17a1:NM_007809:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
NA
C2:
PF0006717=p450=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGAAATGATAAAGGAACACACT
R:
CTCAGGATTGTGCACCAGGAA
Band lengths:
287-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: