DreINT0054107 @ danRer10
Intron Retention
Gene
ENSDARG00000033566 | cyp17a1
Description
cytochrome P450, family 17, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040213-2]
Coordinates
chr13:28474258-28476393:-
Coord C1 exon
chr13:28476307-28476393
Coord A exon
chr13:28474468-28476306
Coord C2 exon
chr13:28474258-28474467
Length
1839 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTGTTTGTCTCCATCTACAGGTG
3' ss Score
12.46
Exon sequences
Seq C1 exon
ATTTTCCCAAATAAAGACCTCAGAATCCTAAGACAATGCATTTCCATCAGAGATAAACTGCTTCAGAAGAAATATGAGGAACACAAG
Seq A exon
GTAAATGTGCAATTTCATATTACAAAAAAATGTAGCCTATGAAATGAATACAAGTAAAAGATAATCTTTATATAGCCTACTTTTTGAGTAATCTAAATAATCCTTTTCTACTGCACTCTCAGAAGAAAAGTTCCAAAAGTCTTTTAGAACATTTGAGGAGTTCAGATGCGAAAATCTGGAATTTTCTTCTACAACGAGCATTTTTCTCAGCCCCTTATGTTAATGTTCGGTTATTTCACCAATTATTTATTATTTATTATATGACCAATTCTTTGCCATAAAAGTGAAATTACTGAACATAGACATAGGAGCCTGAGAAAAATGCTAATTTTAGAAGAATTTCAGATGGCACGTAGAGGTTTTTGCATCTGAACTCCTCATTCGATTAATTTGAACAGTACAGAATCTTTTGTGGAATGGAGAGGTTCTAAGAATATTAAAGGGACATTTCACCCCAAAATTTACTCATTATTTGATCACCTTTTACTTTTTCCAAACCAGTGTCAGGGTAGAAAAGTAATGCATTACAATATTGAGTTAAACTCTCCAAAAAAGTAACTAGTTCTGTTACTTAGTTACTTTTTATGGCAAGTAATGTGTTATGTTACTTTTGAGTTACTTTTGTGTTACTTTTTCTGACCTGGTTGAGGCTTGATCTCTTTCAGGGGGGGGGGTGTCTTGTTTTTTTTTTTTTTTTAAAGTGGAGCTCTACAATTAACAACACACGATATAACCTTCTTTTACCTTTAAAAAACGCATCAAAAAATGAATGTAGGATAATTTTATCTTCTGAGAACTTCCTTACCCCAGAGTTATAGGCTACATGGCGTACAGATTAATGAAAGTTTAAAGCAATGTGTTTGCTACTTTTGTACTTTCTGTCTGATTAAAAAGTAAAGTCACTGTTCATTCAGATAATCATCTTTTCCATATCTTCCATGTGTTTAAAATAATGAGAATATTTTCATTGCAGAAATGTAATGCTCTGCCATCTTCATTTCTGTCTGTTCCTGCATTCTCTCATTGTGTGTGGGGGATTTAACGTGACGACGTTATTTTTAATTCTGTAAATTATTTTTGTAAAAGTAGATGAACTAAACTAAAAAGTAACTCATTACAACTTTTATGAAGTAACTCTAATATTATAACTTTTTGTAATGCGTTACTTTACTCTTTATTTTGTAATAATATTAAGTAACTCGCGTTACTTGTAATTCATACCCCCAACACTGTTCCAAACCTTAAGTTTGTTCCCTTCTTCTGTTGAAAAAAAAAAAAGCTAGAAATGAAAGCTAAAAAATATAAAAAACCTCATTGACTTCCATAGCAAGAAAAACAAATATTATGAAAGTCAATTTTTATAGGCTTTCAGAATATTTTCAGCTCAAAAACATGTTCAACAATGGGAGGAAACCCATAAAGTTTTGAAACCAGTATGAGTAAATAACAACATTTGGGTGAACTGTCCCTTTAAAGATCTGCGTGGAACCAAAAAAAGCCAAGAAGGAGCTTTTATTTTTAAGAATGAAATTTTAAATGATGTTAATGTTACACCTCGACGATATTAATGCTCATAAGTATGCATAACTTTATAAACTACCATTTTCATCGCTTGTGTCATATTTACAGAAACTGCCGGTGATGACACAAAATGCAAAATTGCTACAAGTGTAAATTTTAATATAGAGAAGTGTGGTATGAAACCGTATATCGCCCTAACCTATCTAATCCCTAACCCCAACATCAGAAAACCATTCAGTGTTGGTAACATAATCTGATGGGTAGGATAAGAATGTCAGGACACCTGGTCAATGATGTGGTGTTTGTCTCCATCTACAG
Seq C2 exon
GTGACCTACAGTGATAACGTGCAGCGGGATCTCCTGGATGCTCTTCTGAGGGCGAAACGCAGCTCAGAAAACAATAACAGCAGCACTCGTGATGTCGGTTTAACTGAAGATCATGTGCTCATGACGGTGGGGGACATTTTTGGGGCTGGGGTGGAAACCACTACTACTGTACTCAAATGGTCTATAGCTTACCTCGTCCACAATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033566:ENSDART00000043156:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
NA
C2:
PF0006717=p450=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCAAATAAAGACCTCAGAATCCT
R:
CTGTGGATTGTGGACGAGGTA
Band lengths:
294-2133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]