RnoINT0044158 @ rn6
Intron Retention
Gene
ENSRNOG00000020035 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2456]
Coordinates
chr1:266424223-266424849:-
Coord C1 exon
chr1:266424763-266424849
Coord A exon
chr1:266424439-266424762
Coord C2 exon
chr1:266424223-266424438
Length
324 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTCACTGTCTCTCTCCATAGGAG
3' ss Score
13.29
Exon sequences
Seq C1 exon
ATTTTTCCCAACAAAGGCTTGGAGGTGATAAAGGGTTATGCCAAAGTTCGAAATGAAGTACTGACTGGAATATTTGAAAAGTGCAGG
Seq A exon
GTAAGTGATCAAGCAGAGGCCACTATGAGGTGAGAGAACAAAACTGGGGTGTATTTTGGACACCGTGAGATCCCTAGAGTCTGTCAGGGGGCTGTCACATAATGGGCAACTGCTAGAAAGAGACCTATTAATAAATGGGAGAGGGGAGTGAGTAACTGAAATGGTTCTTAGGGAGACATAGAAGAAGGCCCAAGGCTATCCCAGACCCCTCCACTCTCAAGCACAAGAAGCCTTGCTGTGTCTCTGGTGCAGGTTGGAGTGTAGCAGGGATGTTGGAGGTGAGGCTCCCTCCTCATCCTCCTCTCTCACTGTCTCTCTCCATAG
Seq C2 exon
GAGAAGTTCGACAGTCAGTCTATCTCCAGCCTGACGGACATTCTGATTCAAGCCAAGATGAATTCAGACAACAACAACAGCTGTGAAGGCCGGGACCCAGATGTGTTTTCAGATAGGCACATCCTTGCCACGGTGGGAGACATCTTTGGGGCGGGCATAGAGACAACTACCACTGTGCTCAAGTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020035:ENSRNOT00000027160:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
NA
C2:
PF0006717=p450=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCCCAACAAAGGCTTGGA
R:
CTCAGGATTGTGCACCAGGAA
Band lengths:
302-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]