MmuINT0044701 @ mm9
Intron Retention
Gene
ENSMUSG00000024365 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88591]
Coordinates
chr17:34940293-34940636:-
Coord C1 exon
chr17:34940494-34940636
Coord A exon
chr17:34940389-34940493
Coord C2 exon
chr17:34940293-34940388
Length
105 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
AGCCTGTCTCTCCTCCACAGCGC
3' ss Score
10.19
Exon sequences
Seq C1 exon
GAAAGATGGACTTGGACCTGTCCCTGGGGGATTACTCTCTCATGTGGAAGGCCCACAAGAAACTCTCTCGCTCAGCCCTGATGCTGGGCATGCGAGACTCCATGGAGCCTCTGATAGAGCAGCTGACCCAGGAGTTCTGTGAG
Seq A exon
GTGGGGCTAGCTCTTGTAGTAGCCTGACTCTCTTGGGGTCAGCCTCCCTCTCCCGCCAGTACCACTCTGACTCCACAGCCTCTGCAGCCTGTCTCTCCTCCACAG
Seq C2 exon
CGCATGCGAGCCCAGGCTGGCACCCCCGTGGCCATCCATAAGGAATTCTCCTTCCTCACTTGTAGTATCATCTCCTGCCTCACTTTTGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024365-Cyp21a1:NM_009995:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.6=100)
A:
NA
C2:
PF0006717=p450=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGATGGACTTGGACCTGTC
R:
TGTCTCCAAAAGTGAGGCAGG
Band lengths:
237-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: