GgaINT0044916 @ galGal3
Intron Retention
Gene
ENSGALG00000008121 | F1NYI7_CHICK
Description
NA
Coordinates
chr6:24819540-24820056:-
Coord C1 exon
chr6:24819918-24820056
Coord A exon
chr6:24819776-24819917
Coord C2 exon
chr6:24819540-24819775
Length
142 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CACTGCCCCTCTCCTTCCACCCA
3' ss Score
1.75
Exon sequences
Seq C1 exon
GTGACCACGGACCTACTGTCCCGCGGGGGAAAGGACATCGCCTTTGCCAGCTACGGTCCCCTCTGGAAGTTCCAGCGCAAACTGGTGCATGCTGCCCTCTCCATGTTTGGGGAGGGCTCAGTCGCCCTGGAGAAGATCA
Seq A exon
GTAAGTGTTGGATTTTCACCATGCTTGGGTTTCCTGGGATGCCAGGGGCAAATAACTGGGGATTGGTGAAGCAGCTGGGAGCTCGCTTCCCCCTCCCTCCCCTCTCGGCTGCCCCCAGGGCTCACTGCCCCTCTCCTTCCAC
Seq C2 exon
CCAAAGTCTGCCGGGAGGCCGCATCCCTGTGTGAGACGCTGGGTGCTGCGCAGGATATGGCCCTAGACATGGCCCCGGAGCTCACACGGGCCGTCACCAATGTGGTCTGCTCCCTCTGCTTCAACTCCTCCTACCGACGCGGGGACCCCGAGTTCGAGGCCATGCTGGAGTACAGCCAGGGCATTGTGGACACCGTGGCCAAGGAGAGCCTGGTGGACATCTTCCCCTGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121:ENSGALT00000013182:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
NA
C2:
PF0006717=p450=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGACATCGCCTTTGCCA
R:
GGAGGAGTTGAAGCAGAGGGA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]