HsaINT0044107 @ hg38
Intron Retention
Gene
ENSG00000148795 | CYP17A1
Description
cytochrome P450 family 17 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2593]
Coordinates
chr10:102834785-102835392:-
Coord C1 exon
chr10:102835254-102835392
Coord A exon
chr10:102835015-102835253
Coord C2 exon
chr10:102834785-102835014
Length
239 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CATGCCCCCTCTCCCTTCAGTTT
3' ss Score
12.14
Exon sequences
Seq C1 exon
GCAACTCTAGACATCGCGTCCAACAACCGTAAGGGTATCGCCTTCGCTGACTCTGGCGCACACTGGCAGCTGCATCGAAGGCTGGCGATGGCCACCTTTGCCCTGTTCAAGGATGGCGATCAGAAGCTGGAGAAGATCA
Seq A exon
GTGAGTGCCAGGCTGGCCCCTGGGGCTGGGGCTGGATCCCACAGGAGCTGCTGGAGGGAGAGGAGGGTTGGGCAGGGGTAAGGGTTAGGACTAGAGCGCAATGCAGCCTTTTCTTGGCTACTGCTGCCATCTAGTGGCCATCTGCTATCTGTCCCCCGCTCCTGTTAAGAGGCAACTGGTACAGAGAGGGGGTAAGGGTGCTGATTCATTTCCCACCCTCATGCCCCCTCTCCCTTCAG
Seq C2 exon
TTTGTCAGGAAATCAGTACATTGTGTGATATGCTGGCCACCCACAACGGACAGTCCATAGACATCTCCTTTCCTGTCTTCGTGGCGGTAACCAATGTCATCTCCTTGATCTGCTTCAATACCTCCTACAAGAATGGGGACCCTGAGTTGAATGTCATACAGAATTACAATGAAGGCATCATAGACAACCTGAGCAAAGACAGCCTGGTGGACCTAGTCCCCTGGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148795:ENST00000369887:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(23.4=100)
A:
NA
C2:
PF0006717=p450=FE(38.6=100),PF0006717=p450=PU(0.6=1.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTCTAGACATCGCGTCC
R:
ACATTCAACTCAGGGTCCCCA
Band lengths:
293-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development