HsaINT0044107 @ hg19
Intron Retention
Gene
ENSG00000148795 | CYP17A1
Description
cytochrome P450, family 17, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2593]
Coordinates
chr10:104594542-104595149:-
Coord C1 exon
chr10:104595011-104595149
Coord A exon
chr10:104594772-104595010
Coord C2 exon
chr10:104594542-104594771
Length
239 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CATGCCCCCTCTCCCTTCAGTTT
3' ss Score
12.14
Exon sequences
Seq C1 exon
GCAACTCTAGACATCGCGTCCAACAACCGTAAGGGTATCGCCTTCGCTGACTCTGGCGCACACTGGCAGCTGCATCGAAGGCTGGCGATGGCCACCTTTGCCCTGTTCAAGGATGGCGATCAGAAGCTGGAGAAGATCA
Seq A exon
GTGAGTGCCAGGCTGGCCCCTGGGGCTGGGGCTGGATCCCACAGGAGCTGCTGGAGGGAGAGGAGGGTTGGGCAGGGGTAAGGGTTAGGACTAGAGCGCAATGCAGCCTTTTCTTGGCTACTGCTGCCATCTAGTGGCCATCTGCTATCTGTCCCCCGCTCCTGTTAAGAGGCAACTGGTACAGAGAGGGGGTAAGGGTGCTGATTCATTTCCCACCCTCATGCCCCCTCTCCCTTCAG
Seq C2 exon
TTTGTCAGGAAATCAGTACATTGTGTGATATGCTGGCCACCCACAACGGACAGTCCATAGACATCTCCTTTCCTGTCTTCGTGGCGGTAACCAATGTCATCTCCTTGATCTGCTTCAATACCTCCTACAAGAATGGGGACCCTGAGTTGAATGTCATACAGAATTACAATGAAGGCATCATAGACAACCTGAGCAAAGACAGCCTGGTGGACCTAGTCCCCTGGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148795-CYP17A1:NM_000102:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
NA
C2:
PF0006717=p450=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTCTAGACATCGCGTCC
R:
ACATTCAACTCAGGGTCCCCA
Band lengths:
293-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)