MmuINT0044658 @ mm10
Intron Retention
Gene
ENSMUSG00000003555 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88586]
Coordinates
chr19:46670538-46671092:-
Coord C1 exon
chr19:46670957-46671092
Coord A exon
chr19:46670768-46670956
Coord C2 exon
chr19:46670538-46670767
Length
189 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
ACTTTCCTCCCTCTTGTCAGTAT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA
Seq A exon
GTGAGTGAAAGGCTAACCCTTAGGGCTAGGGGGCTGGGGAAGGATGCTGGGCGGCTGGGTGCAGCCATTTCTTAGCGGCTGCTGCCATCAAGTGGCCATCAGCTCTCTATGCCTATCCCTGGATAAGACCTTGGCCAGAGGCGACAGCGTTGACTGATCCCTCCTCTTCACTTTCCTCCCTCTTGTCAG
Seq C2 exon
TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003555:ENSMUST00000026012:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCTTTTCCCTGTTCAGG
R:
TGGCCCAGGACATCCACAATA
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types