DreINT0054113 @ danRer10
Intron Retention
Gene
ENSDARG00000053966 | cyp17a2
Description
cytochrome P450, family 17, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-100822-1]
Coordinates
chr23:45830135-45831488:-
Coord C1 exon
chr23:45831350-45831488
Coord A exon
chr23:45830365-45831349
Coord C2 exon
chr23:45830135-45830364
Length
985 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAAC
5' ss Score
4.93
3' ss Seq
CTGGTATGCTGTGTGTACAGTGC
3' ss Score
4.17
Exon sequences
Seq C1 exon
GTGACCACCGACCTGTTGACTCAGGGTGGGAAGGACATTGCGTTTGCAGACTACAGTCCACTGTGGAAGAACCACCGGCGTCTAGTGCACTCCTCGTTTACACTGTTCGGCGAGGGCTCAAATAAACTGCAGACCATCG
Seq A exon
GTAAACTGAACACTCACAAGATTTGATTTATATTGATTTAACTTCAGATTGATTTAGATTGTGTGCACATTTACAACACAATCTTTTTAACAATTCTAGATTTTTGTATCAATTCTAGAACTTTGTAACATTTCTAGATCTTTGTAACAATTCTATTACAAACATTTCTAGAACTTTGTAACAATTTAAGAATTTTGTAATGTTTCTAGAATTTTGTAACATTTCTGGAACTTTGTAAAATTTCTAGATCTTTGTAACAATTCTAGATCTTTGTAACAATTATAGATCTTTGTAACAATTATAGATCTTTGTAACAATTATAGATCTTTGAAACAATTATAGATCTTTGTAACAATTCTAGATCTTTGTATCAATTCTAGAACTTTGTAACATTTCTAGATCTTTGTAATATTTCTAGAACTTTGTAACAATTCTATTACAAACATTTCTAGAACTTTGTAACAATTTAAGAATTTTGTAATGTTTCTAGAATTTTGTAACATTTCTGGAACTTTGTAAAATTTCTAGATCTTTGAAACAATTCTAGATTTTTGTAACATTGTAACAATTCTAGATCTTTGTAACATTTCATGAATTTTGTAACAATTTTAGAACTTATCTAAAACTTTGTAACAATTCCAGATCTTTATAAAAATTCTAGATCTTTGTAACATTTCTATTACAAACATTTCTAGAACTTTGTAACAATTCTGGAATTTTGTAACATTTAAGAACTTTAACAATTCTAGATCTTTGTATAATTTAAGAACTTTGTAACATTTCTAGATCTCTGAAATATTTAAGAAATTATTAACAATTCTAGAACTTAACTAGAGCTTAGCAAAATTTGGAATATTGTATTATTTTTAGGACAGTGAAAGATTTTTAGAACTGACTTACGCTTATAAACACGCAAATACACTCAGACACATACACACACGCACACACACTCACACACTCACTCACTGGTATGCTGTGTGTACAG
Seq C2 exon
TGCAGGAGGCGGCTGACAGTCTGTGTGAGGAGCTCCAGGCCTGCAGGGGTCAGAGTTCAGATCTGAGTGTGGTGTTGATGCGCGCCGTCACTAACGTGATCTGCAGGCTGGTGTTCAGCTCCTCCTATCAGCCCAGCGACCCCGAGCTGCAGACCGTCATACAGTACAACGACGGCATCGTGCAGACCATCGCCAGAGGGGGACTCGTGGACATCTTCCCCTGGTTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053966:ENSDART00000076086:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
NA
C2:
PF0006717=p450=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTCAGGGTGGGAAGGAC
R:
GAAGATGTCCACGAGTCCCCC
Band lengths:
342-1327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]