MmuINT0044750 @ mm9
Intron Retention
Gene
ENSMUSG00000060407 | Cyp2a12
Description
cytochrome P450, family 2, subfamily a, polypeptide 12 [Source:MGI Symbol;Acc:MGI:105055]
Coordinates
chr7:27814109-27814743:+
Coord C1 exon
chr7:27814109-27814301
Coord A exon
chr7:27814302-27814580
Coord C2 exon
chr7:27814581-27814743
Length
279 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CCCCATTTCCCCCACATCAGCTC
3' ss Score
3.77
Exon sequences
Seq C1 exon
ATCCTCATTGGCCACCATGCTGGGCTCAGGGCTGCTCCTCCTAGCCATTCTGGCCTTCCTGAGTGTGATGGTCTTGGTGTCTGTCTGGCAGCAGAAAATCAGGGGGAAGTTGCCCCCAGGACCCATTCCTTTGCCTTTCATTGGAAATTACCTGCAACTGAATAGAAAAGATGTATACAGCTCCATCACACAG
Seq A exon
GTATCATTGGATGAAGGGATGGATGGGACATGGGACACAGACAAGAGTCTGTGTGATTTCAGACGTTTTGTGTCAGAAAATTCACAAAATAATCCAAAGTCTCTTATTAGTGGGGTTTAGAAGGCTGTGGAGCTATTTCAAGTCTTTGGTTTGTTGTTTGCTTGCTTATTTGTTTGTTTTTCAAGAATTTGTTTGTAAAATATCACATAATCTGACTTCTGTGTACTGGTCCAGTTAAGTGAATAAGTCCTCTAACAGCCCCCATTTCCCCCACATCAG
Seq C2 exon
CTCCAAGAGCACTATGGCCCTGTGTTCACCATCCACCTTGGGCCTCGCCGGGTTGTGGTGCTTTATGGATACGATGCAGTCAAAGAGGCTTTGGTGGACCACGCTGAGGAGTTCAGTGGACGAGGCGAACAGGCCACCTTTAATACACTCTTCAAAGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060407-Cyp2a12:NM_133657:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.1)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGGCTGCTCCTCCTAG
R:
CCTCGTCCACTGAACTCCTCA
Band lengths:
294-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: