DreINT0148506 @ danRer10
Intron Retention
Gene
ENSDARG00000068493 | si:zfos-411a11.2
Description
si:zfos-411a11.2 [Source:ZFIN;Acc:ZDB-GENE-131119-33]
Coordinates
chr15:92305-92917:-
Coord C1 exon
chr15:92731-92917
Coord A exon
chr15:92468-92730
Coord C2 exon
chr15:92305-92467
Length
263 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AATTCTGTTCTCTAAAACAGTGG
3' ss Score
6.4
Exon sequences
Seq C1 exon
CTGATCGGTAAGAGGAATGGAGCTCTCAAGCTCACTGCTGCTGGTTTTGGTCTTGACTGTGTTGATGTTGATCAGATGGAGGAGGAAGGAGAACGGACTTTCTTTGCCCCCGGGGCCACTGGCACTGCCACTGATCGGAAACTTACTAACAGTGGAAACAAGTGCACCATTTAAGAGCTTTATGAAG
Seq A exon
GTGAGAGTGATGGCAGGGATGTGTATTTCTGAACTTTATGCTTGAAATATTAAGATCTTTTTGGCAAGGTGTTATAATATTGTAACCTTTGAGTCATGTGAGGATTATTACCAACACATTACACTGCAGTTGTGTTAATCTGAACATCATAATACCATTTCATTGTTTTCTGTGAGTCATTGGTTTTAATGTAGCAAATACTGTCTGAATAGCTCAGAAAATGTTTATTGATATGTTGCTGTTAATTCTGTTCTCTAAAACAG
Seq C2 exon
TGGAGCAAATCCTATGGGCCGGTGATGACGGTGCACATCGGGACTCAGAGAATGGTGGTTCTGGTGGGTTATGAAACAGTAAAAGAGGCTCTGGTGGACCAGGCTGAAGACTTTGCATCCAGAGCTCCCATTCCTTTTACCAACAGAGTTCTAAGAGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068493:ENSDART00000099074:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGCTGCTGGTTTTGGT
R:
AGGAATGGGAGCTCTGGATGC
Band lengths:
292-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]