MmuINT0044765 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:27716650-27718639:-
Coord C1 exon
chr7:27718498-27718639
Coord A exon
chr7:27717552-27718497
Coord C2 exon
chr7:27716650-27717551
Length
946 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CTTCCCTCTCTCCTCTTCAGGGA
3' ss Score
12.6
Exon sequences
Seq C1 exon
GGCACTGATGTGTTCCCTATAATGGGTTCTCTGATGATAGATCCAAAGTTCTTCTCTAGCCCCAAAGACTTCAACCCACAGCACTTCCTGGATGACAAGGGACAGTTGAAGAAGATCCCTGCTTTTCTGCCCTTTTCCATTG
Seq A exon
GTAAGAAAACACTGGGTTACCAGACCACTGCTCACACCAACAGGGGTAGCTCATGTCAGCTCCCCTCTCTGTGATACAGCCTAGCATCAAGCCAACCAGTTGCAACCCCTGGACCTCCCAAGCATCAGACATCCTAGATGCCTATCAACGGGTCAGTGGGATCAGTGATTTCTTTCAGAGAGCGGGGGGTGGGGGGGCGCAGTTTTTAATGCAGTTTTAAATGAATTTTTGTTTCCTTTTTAAAAAAAATTATTTAATGTTCACTGGCGTAAAGTTGTCAGATACCTTGGAACTGTAGTTACAGACACTTATGAGCTACCATATGGGTGCTGGGAATTGAACCTGGGTCCTTTGGAAGAGAAGACAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCATATATTCAGTCTCTTTAAAAGAGGACAACAGTCAAGTGGTGGTGGTACATGTCTTTAATCCATGCACTGGAAAAGCAGAAGCAGGTAGATCTGTGAGTTCAACACCAACCTGGGTCTGTGTAAGTTACAGGACAGCAAAGACTACTCAGAGAAAACCCTGACTTAAAAAAACTAAAAATAAATAAATAATAGATAGATGATAAATAGATGCATATGTACATACATGTGTACTTATATACGTAGATGATAGATAATTAGATGAAGAAATGAGTGAGGCCACAGCAGAGCATTCACATTGGAAATATAATTGGTAATTGGTAGAGTAAACATCTAGACTTCTCATTGTTCCAGCCTCCCATGGGTTACCCCACTTTGTGTGTAGGAACATTGGGGTTCTGAGAGACTTAGGAGCCTTTCCTAATGATCCCTCACACTCCACTGTAGAAACCCCTTCTCCCTAAGAGAACACGGCTGCACACTGGGTACTGAAGCAAGGCATCAGTGAGAGCTGCCTCCACGCCTGTGCTCTTCCCTCTCTCCTCTTCAG
Seq C2 exon
GGAAGCGATCCTGTTTGGGATACAGCCTGGGTAAGATGCAGCTGTTCCTGTTCTTCACCACCATCTTGCAGAACTTCCGATTCAAATTTCCAAGGAAACTAGAAGATATCAATGAGTCCCCCAAACCAGAGGGGTTTACCAGGATCATACCAAAGTACACCATGAGCTTCGTGCCCATCTGATTCTGGGTTGAGCCAAGGTGGATCAAGAGGGAGGGAGAGCCTGAAGTGGTGCCAGAAGGAAGGTGGAGTGGAGAGAGAAGATGAAGGGGTTAAGAAGGGACCACGTGCATGGAAGAAATAGAAGACTACTCACCTTGGTAAAATTGTAACAGTAATAATAAAAAGAAAGAAACACCTAGTGGGCAGCAGTAACAACAGCTGTCACTCATCCAGAAAGGGTCACTCGCCTCTGCAAAACTGTCCCATCCTTCTCTCATTCAGTACTCGAAACAAGAGCAGTGTGTTCCCAAGCCCAGTGTACAGGTCGCAAAGATGAAGCTTACAAATTTGAATCTAAACTGAGGTTTAAAAATTTCAGGTTAGCTAAGTCTGAGGCATGGCACTCTATCCCCAGCATTCAGAGGGAGGGGAACATGAAACTCTAGGAGGCCAGCCAGGATTACACAATGAGAACTTATCTCAAAAAAGCAGCAACAGCAACAAAAACATCGTTTAAATTGCATTCTCATAGACCATAAGAGTCCAGCACGTACTTAAACACACAGATTTGTATCTACAGCCATTTGGTCAGGTTTTTCGTTCTTTTTGTTTTGTTTACCGATTGTGTTTTTCTTTTTGCTTTGTACATCACTGTTAGGGACATTTAATTTGCATTTACTTAGTAGTGTGGGTAGTAGAACATGCCATGGGTCACATGTGGAAACAAAAGAATGATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp2a22:NM_001101467:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCCTGGATGACAAGGG
R:
GCACGTGGTCCCTTCTTAACC
Band lengths:
352-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: