MmuINT0044814 @ mm9
Intron Retention
Gene
ENSMUSG00000040650 | Cyp2b23
Description
cytochrome P450, family 2, subfamily b, polypeptide 23 [Source:MGI Symbol;Acc:MGI:3646735]
Coordinates
chr7:27466616-27471449:-
Coord C1 exon
chr7:27471279-27471449
Coord A exon
chr7:27466779-27471278
Coord C2 exon
chr7:27466616-27466778
Length
4500 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGGTACCTTTATGCTTGCAGCTT
3' ss Score
6.67
Exon sequences
Seq C1 exon
ATGGAGCCCAGTGTCTTGCTCCTCCTTGCTCTCCTCACAGGCTTCTTGCTACTCTTGATTAGAGGCCAGCCAAAGGCATATAGCCGTCTTCCACCAGGACCCCGTCCCCTGCCCTTCTTGGGAAACCTCTTGCAGATGGACAGAGGAGGCCTCCTCAAGTCTTTTATTAAG
Seq A exon
GTGAGAACTATATGAGGTCTTAGTGTGGGATTCCCCCTGCTTTTTTTTTTTTTTTGGAGGTCACTGATCAGGAAGAGCAAGAAACACCTTCCAGGGTGTAGGTTCAGGTGGGAAGGTTGGTGAGGGAATGGTTGAGATCTTGACTGGTGATGGATGCTGACTCATGCTCAGACTGACAAGTGAGTCTTCCTGTGTTGGAATTGTGTGGGGCACTGTACTTGGAGTGTGAGAGGTATAGAGGTATTGAGGTGTTGAGGTGTAAGCATGTAGAATTTCAACTTGTGGGGCTTGTCTGTTCCAGAAGAGAAAGAAAAATACCAGAGGTATCAACAACCAAGGTTTGCTTAGTCAGCAAAAGAGATTAGCCTGAGGTGTTCCAGGACAAAGAGGACGAGAGGCAAGGCAGGAGGTGAGGTGGCTAGGTAGGTAGGTGTGTAGGGCTAGTCACTTATAAAGACCATATACCATCTAAGCAGCTGGTTCTGGCACTATCTTTACTAGTTCTCACAAGTGGGATTCCATGTTTAATTACCACTTGCGCATTAAAAATCAATAAGCATCCGTGCCCCCAAATCTGATTGAAAGGATAGTGATCCACTTGACTTAACATCTCATGTGCTGGAATGACTGGTGTGGGCACATCTGGCCACAATCATTTTAAAAATGTGCTTCCCACATGTTGGAAATGTCAAGTTAACATTGTTTTAACTTACTGTTTTTTTTTTTTTATTCCTTGAAAATCTAATTCCTTTTAGTCTGATTCTCATCTCCACCTTTTTCTTTGAAGCCCATTCCTACTTGGAAGCAGCTATGGTTGCTCAAATGAGTGTGGATATGGTGACTATTTATTGGAATATGAGCAACTTATGAAAGGCTGCACCGCTGAAGAAAGTGGAGTCCTCCTGTCCACCCCCCACAGAAATCTGCCCACAGACTCAGAGTGAGAACTGGGGACATCCTGTCATGATAGCATGACATATTGCATCTTTTCCTGATAGGGACAGCCACAATGTCATAAGCAAATAAGATTTCCATAAACTAGGTAATGCATAGTGAGAAGGAATCTTCTACCATCTATAGGGAGCTTTAAACAATTGTTCAAATCCACAATCTAAGTGTGTGGCAATCTCAGATAGCTAAGCTGCATTCTTTGGCCATTAGGAGATGAAAGTCTGGTTGCAGATATAGAATAAAATGATAAAAATTAGTCAAGTTTCTTGTTTACATGTGAAATTGAATAAAAGCGAAGCATCAAGAATTTTAAGGTCAGTTGAGAATTGATAGAGTTACATAAGAGGTAGGACTTTCTAGCGCCACAAAGACTTCCTCAATTGATGACAAATATTGAAAAGAAGCCATTCCTGAGCAGCAATTGGTGCTAGGGAAAGAATGGACATAGGTGCATGATGTTATGATGTAACAGGCAAGAGGCAGTTGCATTTTATAGTAATGTTGATTAGACAGACTGATGTCAATTATGGTAAGAAGTGAAGTGGTTCAACTAAGCAGACATCAAGTCTTTTGGTGTTTTTATGTTTTCTGTTGCTATCATAAAATACCAGAGCCTAGGTTCTTTATAAATTAAAGGTTCATCTAGCTCCTAATTGTGGAGTTTGGCAGTATAAGATCAAGCAGATCATTTTTTCCAGACTCTGGTGTGTAGTCTTCTCATGTGTCACAACAGAGTAGAGGAAAGAAAAGTCTGTCACATGCAGAAAAGGCTAACCATAGAGAATGTTCTATAATAATTAATTCTCCAAAGATTAAGTCCTCTCTGCTTGTTCAGTATTAAGGAAGACCCATTGCCTCTCACTAGGCTCTAGCACTTGAAAGCTCAACCACCTCTCAACACAACCACTTTGGCACTACTCTCTTCAGCATGTGAACCCACAGAGGACACTTAAATATTTTCAAGTCACAGCATATAGAACAGGCAAGAAGGAAAGGGTAGCTGGTCCAGACATGTGGCATGGATGCTAATAGGTGGCCATGTTCAATAGTGAACCCCAAGAGAAACCATCTTGGCTGTCTCAAGCATGTTCTGTATGAACCTGCAGCCTGAATCAAACATAGCTCCTTAAGGCTGTGTCAGCTATGTGAGGTTTGGGTCAATTTCATACCCCCGTGCTAATGCACTTGAAGGTGCTGATGATCCCTCTGGCATGTTTTCTCGAAGCTTCCTTGGTGGCTCAAAAATTGAATCCACTCCACTAAGCAGCTGTGTTGTTCTAAGATGGTTGTGTGGGCTTTCATCAATGATGTGCCTGGTACAAAGATTGAGGTCTTAGTGATGGCATTCTTTTGGTGAGTAGTAAAGAAACAGAAAAGCTGTAGCCTTAATGACCAGTTTGAGAACTAAAAATCATGAGCATTCTATAGTCACAAATTAATAATTTAATTTTTTAATAAATAAATTCTATTTTACAATGCTATTATATTGGTGGGGATTGTTTCAGTTGTGTTTTTAAAACACATTTTTAAAGCTGGGTATGGTCGTGCATCACATCCTGTTACTGGGTACAAGGAGGAAACTAGGGACTTCAGGCATGCCAGACAAGCAATCTGCCAACTGAGCAACTGAGCAACAAGCAATCATGCCAACAAACAATCAATCCCTAGAGGGGGCACCTTCAAAACATCCTTCCACAACTCCTTTTGTTCTGGACTGTTCTTCTTTGTCTTACCATCAACATCTTGGCATCCTTTCCTAGGACCCATGTTCTGTATAAATTATGACACAGAGGCTTCTGAACAACTCCTTTTGTTCTGGACTGTTCTTCTTTGTCTTACCATCATCATTTTGGTATAATTTCTTAGGATCTGTGTTTGTATAAATAATGACACAGAGGCTTCTAATACAGTTTAAAGCTTAGGCCTTTTGCTAGGCCAGTCTCTCAGCTGTCTCATCTAACTTAACTGAACTATCTTGCTCATGGACTGCCACTGGCTAGCTCCTCTATACCTTTCTCTCCACCCCATGTCATCTCCTTTGTGTGTCTACCCTCTTAATTTCCTGTTCTGCTTTCTTTCCCTGTTTCATTCTTTATGACTGAAAGTTCTGCCCAATACTTCCCATCTTATCAGGAATAAGGATCTGTCAGCTCTTTATTACCACCAATCAGCAGCAAGACAACCTTGGATCCAATTGTAGATTGCTGTTAGGCAGGTGAGGAAAGATGGATTTTCACAAAATAGAAATTCCAGTGATGGACCATAGAAATGATGATACCAGAATCCTGCCAGCATTTAGCTCTCTGCTAGCACAGAATTAACAACTGAAAATACAGAGTCACACCTTCACACAATGCAAAAATATTCACAACAATCACTCTTGTCTCCCCCTTTCTTCTTCTGAGACCTTCCTCATAAATGCATTAACATATCTGTCATAAAAGTGTGTTTACTATCAAAGTGAGTTCAGCTCCCTCCTCTGCAGGTTCATTGTTTAAAAAAATCTCTTGTTCTTTTAACATGAATGTCATGGAAGGAAGACCTTCTAGATGCATCTACAATGACCTGAAAACCTCCAGGTCCAAGAATCATAAGAAATAATTCTCTGTTCTTCTTAAATTGTCCAGTGCCAGGCATTTGGAAAATAAACAGAGATAGTGGATGAGGTTTTATTCTTGGAATATTCATCTGTGCAGGTACACAGATGGTGAGAGGAGAGGCTGAGATCTAGAGTATAGAGGTATGGAGGTCCCAAGTCTCTGAAACACTCCTGGCATAAAGCTAATTTGGTTGAAAGTGCAGGCCACTTCTTTTGTAAATATGACCATTCTATTCAAGGGCTTTCAGCACTAGAAAGCATCAATTCCCCAGAGATGCCTAGAGATGGTTGTACTGACAGGCAGTTTTCCACCTCTGTACTGTAGACATGATTGATTGATAGAATTGCCAACCGTGGTCATCCATTTTCCCTCCCTAGCAACCCAGTGGATGGGCCAGGTTCATTCTCTCTGACAGTTGTAAGGAGGCATTGATCAGGTTGAAGCTGGGACATAGAAAGGATGGTTCTTAATGAGATGCCATGAACTGATGGCTAGCTGAAGGGCATGTTCATGGATCTATATCTGTGTCCTATTTCCATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATATCTATCCATCTATCTATCAACAATAGGGTCATATGTGGCCCAGGCTGGCCTCCAACTGGATATATAGACAAGGATGGTTACTGATTCTCTGGCCTCTACTTCCCTAGTGCCAGGATTATAAGCATGTGTTGCCCTTGCTCCCCTATACTACAGTACCGGCACACTGAATAGGGCATTCTATCATCCAATACAGATCCAGTGGTGAAATAACCCTTCAACTCTTAGGTCTTCTGAAGGGGAAGGGTAGCCAGGGGAGGAAGTAGCAACTTACCAATATGTATCTAAGTGTTTTAACAGTTTAACAACAATATCTACACTTAGTAGTTAGTACACTGGTACCTTTATGCTTGCAG
Seq C2 exon
CTTCGTGACAAACATGGCGATGTGTTCACAGTACACTTGGGACCAAGGCCCGTGGTCATGCTGTATGGGACAGAGACCATAAAGGAAGCTCTGGTGGACCATAGTGATGCTTTCTCTGGCCGGGGAGCAATTGCAGTGATTCAGCCAATTGTACAGGACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040650-Cyp2b23:NM_001081148:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(19.4=45.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: