MmuINT0044904 @ mm10
Intron Retention
Gene
ENSMUSG00000025002 | Cyp2c55
Description
cytochrome P450, family 2, subfamily c, polypeptide 55 [Source:MGI Symbol;Acc:MGI:1919332]
Coordinates
chr19:39031262-39034380:+
Coord C1 exon
chr19:39031262-39031438
Coord A exon
chr19:39031439-39034238
Coord C2 exon
chr19:39034239-39034380
Length
2800 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AACGAAATAAAAATTCTCAGGAA
3' ss Score
1.49
Exon sequences
Seq C1 exon
GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG
Seq A exon
GTAAAGTGTTATTTGATAACTTATGTTTCATCAATTATTTCTATTCTTTTAAAAAAAAGATTTATTTATTATTTATTATATGTAAGTACACTGTAGCTTTCTTCAGACACTCCAGAAGAGGGAGTCAGATTTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGATCTTTGGAAGAGCAGTCGGGTGCTCTTACCTGCTGAGCCATCTTACCAGCCCAATTATTTTTATTCTTATTGGAAAAAAATTAACTTTCCAGGCAAGAAGCACTTGGTAAGCACTTTAGGTTCCTAATGTGGGCATGAACTGGACTAGCATCATTTAAGATTTAAAATTGAATTGTTAAGCAATCAGAATTATTTAATAAGGTATATGAGGACAGGGAAGATACCCTTTAAGTGAATTAGGCATAAACAACTTAAAAATGCACACTATCAAACATTAAAGTAAAAAGTGAACTTGATGACACAGGAGAATGACAGACCTGTGCTTAGCGGGGCAGGTGATTTCGGCTTGTTACTACTCTTTGTTACTAATGAGACTTGAGTTTGTTATTAATCTTTGAGTATTTGGAGTGAGGTAGCAGGAGTGAGGATTTAAGGTAGGTACAGTGAAGTGATGAGAGGTTCAGATGTGTGTAGTGACACAGAGGAGGATAAGAACCTTAACTGAGTGTAACCAGACATGATTCTGGACATACAGTCAGGTAAAAATATCTTTGAGGTACTCTGAAAATGTAGGCATTGGCATGAAGAAATTCCACTCTTTCAGGTATTTGTTTAAAACAAAACATGAGTGCAATGCTTTTGCTACCCAGCGGGGAATCACTGAGATCAGAGTGGAGTTCAAGAATCTGTAAAAGGGCCTTTTTCTTCTTTGGACTGTCTTAATGGTAGTCTGCATTATGAAAAGATAGATTCTGAAATAATGTCATCAATCCTGGCTTATTTTCATCCATCTTGAAATTTTTAAATCATTCATCTATTTTGTGTTTGTGGGTGTTTTGTATGCCAGAAGAGTCATTACATCTCACGGGACTACAATTATAGATGGTTGTGAGCCACCATTGAACTCAGGACCAGCCGGTGCTTTTAACTACTGAGCCACCTCTCTAGCCCGGCCATTTTAAATTTTAATCTCTCATATTTTAAAAGTTCACCATTTTATTCATAGGTACCTTGGTTGTTTGCAGTAGATAATGCTGGCAATAATAGGAGAGCAGTCATCTCTGTAACTTATTAATTTCAATTTTGTTTTGGTTATATAATGATGGGTGAAATGGCTGAGTCATGTTCATTTCATTTTTACTGATGAACTGCCTTTCTGTTTGCCAAGGAGACTGCAATAGTTTACATTAGAATAGGAATATGCAGTGTTCCCTTTGCCTGCTTCCTCACCTGCACTTTCCAGTGTTAAAAAAGTCTCCCTAGTGGCTAGCACTGTTAGGAGTCCTTGTAGCAACCACTATCACCATGGTTTAGAGAATCACATGTATGTTTCACCTCCTCTGGCCTAGAGTCACTGACTTAAGAGTAAATTTACCAGGAACCTTTGAGATAGTGTTTCACTTATGACTTTGTTCTTCTTTCACTCAGAAAATTCTGTACATTGGCGCTTTTAAAGAATTTTATAATGGCGTCTTTGTATTGCCATTATTGTACCAATATACTTTTAACCTTTGTATTTAATTTTGTGCATGAATATGAATAAATTCTTAATTTACAAGTGTTCTAGTCCCTAAACCCATTCTGACATCAACATATAAAAATCAATACATATTTATATACATGAATATATAAAAACACACATATATACACCTATAAATAAATGTATATACATTTATATATACTTGTGTACACACACACATACACACATATATATATTGATATATTGATATATTGATGCATCAGTTGGTAGAGGGAGAGTCAGAAGTCTCTTATTCAACTTTGTGTTACACTTCAAAAACTTCAAACTCTTTCTGGGTACATTGGTGCATGCCTGCCATTTTTCATGTTTACACTTAACATATGAATATTCATACTGATGTTAAAGATTTTTTATTATTATTCTAAAATTATGCATAGGTGTGTTTGTTTGTCAGTGCTGGATCATTTGGTGCTAGAATTACAGATGGTTGTAAGCTGCCAGGTATGGATACTAGGAATAGAAGTTGGATCCCATGGAAGAGCAACAAGTGTTTTTCATGGCTGACTCATCTCTCCAACCTCCATACAGCTGTTAAAGTACTTGGGCTCCAGATGAGCTACACCATCTCCATTGTCGTATGTGTTTTAAGAAAGAAAGAATGGGGGATGGAGAGATGGTTCAGAAGATAAGTGCACTGGCTGCTCTTCTAGAAGCCCTTAGTTAAATTCCCAACAATCACATCGTGGGTCACAACCATCTATAAATGATATCTTGAGGCCTCTCCTTGCTTGCAGTCATAAATGCAGGCAGAATGCTGTACATATAATACATAAATCTTAAAAAAAGAAGGAATGAAAATTTTGTATCAGTGGGTACTTTTTTGTTATGTTATTGGTGTGGCATGCTCTGAGAAATTCAATTTTGATTCAAGGAAGAAATAAGGGCATAGAAATGAAGATAGAGGTAGTTAACTTACATTCTGTGCTATACTGTGCACTTGCTGTAATAGTTTTACTATGCACTTCACATTCTAAATTTGCTTATTGTAAGCCAACTTGTATTATTTGAAAATTGTTGAAATTGATCACTTTCTAATATGTATTGTCACTCTCTAATAACGAAATAAAAATTCTCAG
Seq C2 exon
GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025002:ENSMUST00000025966:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types