DreINT0054257 @ danRer10
Intron Retention
Gene
ENSDARG00000042953 | cyp2n13
Description
cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
Coordinates
chr20:25618691-25619099:-
Coord C1 exon
chr20:25618923-25619099
Coord A exon
chr20:25618833-25618922
Coord C2 exon
chr20:25618691-25618832
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TCACTTCAATTTCCAACCAGAAA
3' ss Score
6.87
Exon sequences
Seq C1 exon
ATCTATGAAGCATTTCCAGCCATTATGAAGCATCTTCCAGGGCCTCACAATGATATTTTCAGTAACTATGACTTACTGAAGAGCTTCGTACATGAGGTCATTGTAAAACACAAGGCTAAACTGGATCCCTCAGAGCCTCGTGACTACATCGATACCTTCCTAATCGAGATGAAGGAG
Seq A exon
GTAAAATAATGCTTAAATGACAGAAGAAGCCTCTTTAACTTATGCTCTTATGTTTAAACAGAAAATTATTTCACTTCAATTTCCAACCAG
Seq C2 exon
AAACCCCATGAAAGAGTAAACGGCTTTGAGGAACCAAACCTTGTTGCATGTGTTCTTGACCTGTTTCTGGCCGGAACTGAATCCACATCCAATACATTATGTTGGGGGCTCATATACCTCATAATGTATCCAGACGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042953:ENSDART00000063058:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCAGGGCCTCACAATGA
R:
GCCGTTTACTCTTTCATGGGGT
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]