BtaINT0010145 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50419368-50420631:-
Coord C1 exon
chr18:50420455-50420631
Coord A exon
chr18:50419510-50420454
Coord C2 exon
chr18:50419368-50419509
Length
945 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
GAAGCCCTCCATCCATGCAGGAG
3' ss Score
5.31
Exon sequences
Seq C1 exon
CTCTACGAGATGTTCTACTCAGTGATGAAATATCTGCCAGGGCCACAGCAACAGGCCTTTAAGGAGCTGCAGGGACTGGAGGACTTCATAGCCAAGAAGGTGGAACAAAACCAGCGCACGCTGGACCCCAACTCCCCACGGGACTTCATCGACTCCTTCCTCATCCGCATGCAGGAG
Seq A exon
GTACACCCTCACAGCCAGGATGAAGAGGTCCAGAGCCAGGCAGAGGGAAATCAAGCTGGGGGTGGAGGAGAACAGAGGCCCATTGAAATCACCCCTCCCCCAACCTAGTAATAACTCACCGACTCTATGGACAGTTTGAGTAAGCTCCAGGAGTTGGCAATGGACAGGGAAGTCTTGCATGTGGCCATCCATGCGGTCGCAGAGTTGGACACGACTGAGCCACTGAACTGAACTGAACTAACCTAATAATCTTCACAATCCCAGTGATAATTAACCATCACTCTTCCACTACTGGAGTTCCCAGGTGGCACCAGTGGCAAAGAACCCACCTGCCAATGCAAGAGACATAAGAGATGCGAGTTTCATCCCTGGGTCGGGAAGATCCACTAGAGGAGAACATGGCAACCTACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGCCCATGGAGTCACAAAGAGACAGACACCACTGAAGTGACTTAGCACGCAGGCCCCAGGGGTTAGGACTCTGCATCCTCAGTGCCAAGGGCCCAGGGTTTAATCCCTGGTCAGGGAAGATCCTGCAAGTCACATGGCACAGCCCCCCCAAAAAAGGAGGGGTTTAATTTGAAAAGGTAATAAAATAGAGTGTTGTTACTTGCTCAGTCGTGTCTGACAGTTTGCGACCCCATGGACGGTAGCCCACCAAGCTCCTCAGTTCATGCACGGGATTCTCCAGGCAGGAATACTGGAGTGGATAACAATTCCTTTCTCCAGGGGATCTTCCTGATCCAGGGATTGAACCCGAGTCTCGTGCACTGCAGGCAGATTCTGTCTGAGCCACCAGGGAAGCCCCTATAAAATAAAGAGACAGGTCCAAAGGGAAAACCCCCAGAAGGGCCCTGAGAGCATAGGGCTTCACGAAGCCCTCCATCCATGCAG
Seq C2 exon
GAGAAGGAGAATCCCAACACGGAGTTCTACAGGAAGAACCTGGTGATGACAACACTGAACCTCTTCTTTGCGGGCACCGAGACGGTCAGCACGACCATGCGGTATGGCTTCCTGCTGCTCATGAAGCACCCAGATGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815:ENSBTAT00000065779:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.3=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACGAGATGTTCTACTCAGTGA
R:
CTCCACATCTGGGTGCTTCAT
Band lengths:
318-1263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development