MmuINT0044778 @ mm9
Intron Retention
Gene
ENSMUSG00000005547 | Cyp2a5
Description
cytochrome P450, family 2, subfamily a, polypeptide 5 [Source:MGI Symbol;Acc:MGI:88597]
Coordinates
chr7:27623887-27625520:+
Coord C1 exon
chr7:27623887-27624063
Coord A exon
chr7:27624064-27625378
Coord C2 exon
chr7:27625379-27625520
Length
1315 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
ATTCATTCCCCTCCCTGCAGGAG
3' ss Score
10.45
Exon sequences
Seq C1 exon
CTCTATGAGATGTTCTCTTCTGTGATGAAACACCTGCCAGGGCCCCAGCAACAGGCCTTTAAGGAGCTGCAGGGCCTGGAGGACTTCATAACCAAGAAAGTGGAACACAATCAGCGCACGCTGGATCCCAATTCCCCAAGGGACTTCATCGACTCCTTCCTCATCCGAATGCTGGAG
Seq A exon
GTAAACCCAGAAGCTAGAGAGTATGGCGGGAGGTTCAAAGCCAAGGAAGCAAGATGAAATCACACTTGGGGGAGGGGGGGACAGTGGACTACTCAAATCAGTCCCTCATTATAAACCTCACACATTACCACTCAGCACCACTGTTCTGTCCACTGCTCAGTCTCAGGAGGATAGACAGACTGAGATCGCAGCCAGTGTATTAAAGGCTTAGTGATATCCACTTATTCAGTACTCACATTTCTTGGGCAAGGTTGTGCTATGACTCCCATCTTACAAATGAGGAGGCTGCAGCTCTGAGAATATAGGCAACTTGTCTTATATCACAGCAGGAGGGCCATGTATCCTACCTCACTGTCTCAGGTTGATGCATGGATGTAACATACCCCCTTAATATTGCCTGTCCTTGTCATTCACATCTGTGAAAATGGTGACCTAGCTTTCCCATGACCTTCTTTCACCTGTGCAGAACAGAAGGGGGTAACGGTGGTCTTTTGTGATAAGTCCTTGTTATGTAGCCCTAGTTGGCCTGAAACTTGCTGTGTAGGCCAGGCAAGTCTCAACCCTGTGGTGGTCCTCCCAGGTCTGCTTTCTGATGTCTTGGATTATCAGCATGTGGTACCAGCTAAGATGGAACTTTAGGCAGTCTGAGTGCAAAGGACTGAGGGATGAGATTCCTCTAGAAAATATTAAGGTTCATAATGAAGAGTTGGAATCTTGTTGCCTAACACTCATTCTGTCTAAGGGCTGGAAAGATGGCTCAGTGGTTAAGAGTGCTGGCTGCTTTCCCAGAGTGCCAGGGGGGGCATTCAATCCCAGCATCTACATGGCAGCTCATAACCACAGTCCCTGTAGATCCAATGCCCTCTTCTGGCCTCCGTGGTTACTGAACACAAGTAGCACTCTGACACCCATGCAGGTAGAACACTCGGTACACATAAAAGTAATTTTTACAGAGCTCTGTTATCTATCTCAGAAAACCCATCTCTACTTTTCCCTGACTTCCTCCAACATGACGTCTGTACCATTGTTTCTCAGTCACTCTCCAGCCTTACTTTCCTAAATATTTCTACAGTTTAAAAATTGACAACTCAGTTGGTCACTAGCAATTGAACAACCAGCTAAGTGATGACTGACAGAAGAACATTTAGGGCACTGGGTCACTTCAAAGGTCTGAAACCAGGAGAATAGCCAGGGTTCCCCTTCTCCACCTTAGGTCTAAGCCAAAGAGAAGTGAGTTCAAGTTGGAGAAAAACTAGAAGGATACCAAGAGTGTAAGGAGGGGATTTGACCTGAATATTCATTCCCCTCCCTGCAG
Seq C2 exon
GAGAAGAAGAACCCCAATACTGAGTTCTACATGAAGAACTTGGTGCTGACTACACTAAATCTCTTCTTTGCTGGCACAGAGACCGTCAGCACCACCCTGCGCTATGGCTTTCTGTTGCTCATGAAGCACCCAGATATTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005547-Cyp2a5:NM_007812:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTATGAGATGTTCTCTTCTGTGA
R:
CCTCAATATCTGGGTGCTTCATGA
Band lengths:
319-1634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: