DreINT0054322 @ danRer10
Intron Retention
Gene
ENSDARG00000101423 | cyp2y3
Description
cytochrome P450, family 2, subfamily Y, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-050522-490]
Coordinates
chr15:101206-101647:-
Coord C1 exon
chr15:101471-101647
Coord A exon
chr15:101348-101470
Coord C2 exon
chr15:101206-101347
Length
123 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
TTTGTTTTGCACTATAACAGGAA
3' ss Score
7.44
Exon sequences
Seq C1 exon
CTCTACAACATCTTCCCCCAAGTAATGGAAAGCTTTTCTAGTAGACATCACGCCATCTTAAAAGACGTAGAAAACATCCGGACCTTCATTAGGAACAAAGTTAAGGAACATGAACAGAGATTAGACTTCAGTGACCCAAGTGATTTTATTGACTGCTTCCTTATCAGACTCACTCAG
Seq A exon
GTATCTAATTGTCTTATTGCTGTGCTTTCTTATCTTCTGCAGCGTATAACACATGTTTAAACCTATTGATCAGACATACTATAGCCTACAATTCTGTTCTGCCTTTGTTTTGCACTATAACAG
Seq C2 exon
GAAAAAGACAAGCTTGACACAGAATTTCACAAAGATAACTTGATGGCGACAGTTTTAAACCTGTTCGTAGCTGGTACAGAGACCACCAGCACAACTCTGAGATATGCCCTGATGCTGTTGATCAAACACCCCCAAATACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101423:ENSDART00000164323:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCTAGTAGACATCACGCCA
R:
AGAGTTGTGCTGGTGGTCTCT
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]