GgaINT0042920 @ galGal3
Intron Retention
Gene
ENSGALG00000023925 | Q8QFT4_CHICK
Description
NA
Coordinates
chr6:17660409-17660908:+
Coord C1 exon
chr6:17660409-17660585
Coord A exon
chr6:17660586-17660767
Coord C2 exon
chr6:17660768-17660908
Length
182 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CAGCACAGCCTTTTCCCTAGGAA
3' ss Score
2.81
Exon sequences
Seq C1 exon
TTATACCAGATGTTCTCCTACGTTCTGGATTATTTGCCCGGCCCACATAACAATATATTCAAAGAAATTGATGCTGTAAAAGCCTTTGTGGCAGAAGAGGTAAAGCTGCACCAAGCCTCCCTGGATCCCAGCGCTCCCCAGGATTTCATTGACTGCTTCCTCAGCAAAATGCAGGAG
Seq A exon
GTAAGGAGGCACCAAGCCACAGCTCATCCCCAGATACACCTATGCTGATGACTTCTCCCAGTTGGCTGCTGCACTTAGCAGAGAAATTCAATAGCTCTGAGTGGAAATAAAAATTTGGGGGGGCACAAGAAAGGGACACCGTTCTCCTTTCAACTTGAGAAACAGCACAGCCTTTTCCCTAG
Seq C2 exon
GAAAAAGACAATCCCAAATCACACTTCCACATGACAAACCTGATAACGTCCACCTTCGACTTGTTCATTGCTGGAACGGAGACAACAAGCACCACCACACGATACGGGCTTCTGCTTCTTCTCAAATATCCCAAGATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023925:ENSGALT00000008787:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.9=100)
A:
NA
C2:
PF0006717=p450=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTGCCCGGCCCACATAAC
R:
TGTGGTGGTGCTTGTTGTCTC
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]