GgaINT0039934 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4W0]
Coordinates
chr8:25574910-25575413:-
Coord C1 exon
chr8:25575372-25575413
Coord A exon
chr8:25575043-25575371
Coord C2 exon
chr8:25574910-25575042
Length
329 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TAACACTTGATTTTCTGAAGCCC
3' ss Score
3.34
Exon sequences
Seq C1 exon
ATGGATGAGACTGCTACCTTCTATGGGAAGATAATGAACCAG
Seq A exon
GTACAGCCCCCTGTCCTCAGCACAGACAGTGTGCACTTTTGCAAGGCCACCTCTTCTTCTCTGGAGTCAAGCTCAAAACTTTGAAAGCTCTTCCACAGTGGGGGTTAGAGATCAGGAAGGCTGAGAAACAAATCAAATTCCCCACTTGAGCTGCTGCTGTGTCAGTCTGTGAGCTCTGAATGGACATTAGTTTGGCACATCTGTTGGAGGGATGGGGATGGGGATGCAGAGTGCGAGCAGCTTCTGGCAAAACCCTTGGGGCAGGACTGAGTCTGATTTTTGAGGAAGTTCTTGCTTTTCACATGGCACTAACACTTGATTTTCTGAAG
Seq C2 exon
CCCAATGGCAGTGACTTCTGTGGGGATAACCTGGTGTTGTGCACTCTTGACCTGTTTTTTGCTGGGACTGAAACCACCTCTACAACCATCCGCTGGGCCCTGCTGTTTATGGCCATATATCCAGAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020625:ENSGALT00000017754:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(20.0=85.7)
A:
NA
C2:
PF0006717=p450=FE(73.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]