RnoINT0044405 @ rn6
Intron Retention
Gene
ENSRNOG00000031004 | Cyp2j4
Description
cytochrome P450, family 2, subfamily j, polypeptide 4 [Source:RGD Symbol;Acc:620007]
Coordinates
chr5:119555028-119557443:-
Coord C1 exon
chr5:119557267-119557443
Coord A exon
chr5:119555167-119557266
Coord C2 exon
chr5:119555028-119555166
Length
2100 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTAGATGCTGTCTTTTCTAGTAC
3' ss Score
6.22
Exon sequences
Seq C1 exon
CTCTATAATATTTTTCCATGGATAATGAAGTATATTCCTGGATCACATCAAACAGTTTTCAGAAACTGGGAAAAACTGAAATTGTTTGTCTCTTCTATGATCGATGATCACCGGAAAGACTGGAACCCTGAGGAGCCAAGAGACTTCATTGATGCTTTCCTCAAGGAAATGTCAAAG
Seq A exon
GTGGGGAAGATGCTTCTGTGTCTTTTCTTGGAGACAATGTATACATTTAATAGTTTCAGTCAATCCTGCATCAACCTAACACACACTTAAGGTTTGACTTGGCACAAATGTATTCTCCTTCAGTTCATAGAACTTTAAATCCTATGGACCACACAAGGTTCATTGAAAAGCAATGAAAACTCTATGATGCTGCTTCTCCAAGGTTCTACAGAACACATATATCTTGTGTTTTGGTTCCTACTTCTGTCCTCAATTCCCAAACTGTAGTATCTCTTTTTCTTTGATCTGTTTGCTTTTGACCTTCCAATCCCTTCTTTAAGGTTAGTTTAGAGTAATTGTTCTCTCTCCAGTTAATCAAATCTACAAAGTGTATTTTAGCTCGTCAAATAGCATGTGAAGGTTCTAAAAAATGAAGATATGAAAATCACTGTAGATCAATGCTTCATGTAAACCATATAAGTGAAAGTAGCAGTAATATTAAACCAGGGGTGTTAGAAATACAGTGTCCTGACTGTAAATGCAGATAATTTCCTGTCATGCTCTTCTTTGCCTTTTCCTCATACATGAGAGAAATATATACAAAGAGAAATTAGTAATTAAACTTCAGAGCTTTGTTTTTGGATAAATCAATATAAAGTCAACTACTAACCCATCTCAACCATATTGCAGCACACAGGCAAAATTAAGCTAAATTCTGGAGTTTAGTTTTAAAGTATATGTGGGGCATCTTCCTTCTCATGATTGTATGGTTATAAACACCATCCAGTCATACACAAGCAAAGAGAATGCAGCCAGTCGGGTTTATTTGTTCTTCTGCATCTTGTGGCAATAACTTGCAGAAACAATTGAAGAGTTTGAAGGTTTGCTTTTGGCTGATATTTTCAAGGGGTTCAACATGAAGGAAAATTATGGGAAAAGGATGTGGTGGAGTCTGTTTATGTCATGGTAGACTAAGAATCAGAAACTTACCAGGACCCAGGACTTTGACACAACCACAGGAATCCCATTTCTGCTGACTGATTTCCTCCAGATGGATACCACCTGCTAGTGTTCCAGACTATCCCAACCAGTCTCAGCAGCTGGGAACAAAGTATTCAAAACTTGAGTCTGTAGGGATTATTTTAGATTCAAACTATAACAATAATTTTAATGTTCTGACCAAAATAGGCTTCTAGCAAAATACACATCAGTGAATCTGTGCTATGAGATTTGATTCATTACATTATAAATTCCTTTTCTACACAGGGAATAATATCAAATTTCTTTCCTTGTTCTATCATAATTCATCTCCCTGATACAGTTTCAATAGAAGCAACATTTTGTTCCCAAAAGATGAGGCAAATTATTCCCTCTATGTAGCACAAGTGTGAGTCCATCAAAATTATAAGCACTGTAAACAATGATGCTTCTAGAGGAAGATAGAAAAGAAGGAATTATATACAAAATGAAATTTTGTATAATCAGCAAGGTTTTAGGTGTGAAATATTAATGAAGTGATTAAACAATCAATAAATACGGAGAATTCATCTCAGTCTTTCTGAAATCAACAAAAACTCTTGTATAGTTTTTGATATGTGTTTACTACATCTCATACAGTTGATATGACATAGTAAGTGGTGTGTGTTATCCTCATTTTATAAACTGAAACAGATAAATGTGAAGTGAACATCTTAAATCATACAGTGACTTAGTGACTTAGCCGGTACTAGAAACCAAATTTGTGTGGGTGGGGTTTATCCAGTCCTGTTTGTATTTATAAAAGGATAGTCACAAAGAAAATAGTTGCCTTGATATTCATCCACCCAAGTACCAGAAGCTTTTGGTCAGACTACAGCAGTTGGAGCAAAAGAGTGCTTTCTAATGAGGTCAAGGTAATATTTTCAAATGAATCCTTCTGAACTCATTAGCAAGGGTGAAGAAGACCCTATGCGTCAATCTCCTTGTATTTAGAGCATGATAATTCTCATGAGATCATTGTGTCCTGAGGAAGTCAAAGGTAACATCACTTCAAATAACATTATTCAAAATTACTACCCAGCATCAGAATCTGTGGATTTAAATAATCACATTTTTATTCTGACTAGATGCTGTCTTTTCTAG
Seq C2 exon
TACCCAGAGAAGACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGCACCCTGGACCTCTTCTTTGCGGGAACAGAGACAACATCCACTACACTGCGCTGGGCTCTGCTCTACATGGCCCTCTACGCAGAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031004:ENSRNOT00000012977:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]