BtaINT0007292 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86410983-86413293:+
Coord C1 exon
chr3:86410983-86411159
Coord A exon
chr3:86411160-86413151
Coord C2 exon
chr3:86413152-86413293
Length
1992 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATAATCACTGTGCTTTCTAGCAT
3' ss Score
6.07
Exon sequences
Seq C1 exon
CTCTACAATGTCTTTCCAAGGATAATGAATTTCCTTCCGGGTCCACACCAAATGCTCTTCAGTAACTGGAGGAAACTGAAAATGTTTGTTGCCCGTGTGATTGAAAACCACAAGAGAGACTGGAATCCTGCTGAAGCAAGAGACTTCATTGATGCTTATCTCCAGGAGACAGAAAAG
Seq A exon
GTGAGGAAACCTGAGTTTTTTTCCAAAGTATTGTTCTTAAAGATCAAATGAAGGGATTCTAATATCTTATTGCTGGTGTAAGAAGTCACCACAAACTTGGTAGCTTAAAACAACCAACATTTATCAAGTCAAGGTAGGGGCAGTACTGGCTCTTTCAAGGCTCTAGGGAAGAAACTACTGATGGACTTTTCCAGAGTCTAGAGGCTGCCTTTACTCCTTGACTGACTCATGACCCCTTCCTCCATCTTCAAAGCCATCAATATAGCACCTTTTTCTGCCACCATCTTCACATCTGCTCTTTATGACTTTCTTCCTCCCTCTTCTAAAGACTCTTGTGATTGTATTGGGCCCACTGGGATAATCCAGGATAATTTTCCCATCAAGAGCCTTATTTCAATATATCTAGAGAATTTTGTCTGCCATATAAAATTCACAGATTCTAGAGTTAAGGACATAGACTTCTTTGTGGGTCATTATTCAGCCTACCACAGGGGAGGAAAAATAGAGGCAGTACTTCACAGAATGTAGGAATAACATTAACTCAAAATTGACGGGACAATTAAAAATGAAGACAGAGGTTTATCAGTATTTGGCCTAAGGACTTTAGAAAGACCAAATACTGCCTTTTCGTAATCCATTCTCTACCCATATCTGAAGGACCTGTACATAAAAGGAAAAAAAAAGTATTATTTCATTATTAGCTGGACCAATGCCCAGTCTCCTACACCTTCCCCCAGCTCCCCATTGCAGAACACAGGTAAATCTGAGTCAGATGCGAGTTTAGCCTCAGATGAGAGAGACATTTGCCTTCCTCCCTCATCCCTATGTCATCCACTTTTCAATGTTACTATAGGAAAGAAGCAGGATAAAAGCCAAATGGGATGACCTTTGCCATAGTCATCCCTCTGGTAAACATATCATTGCATTGGTGTCATCATCTTTGACCCGTCAGATTATTCATTCCCAGAGTTGGCAGAATGGATTTCTTTCCAACTCCTCTCTTGTTTCACTTTATTGTGATAACATTAATAGAAGCATTGATTTCTTTTATGAGGAGGAGACTTCACTTACTATAAGATATGCAGGTGTGGGACCACACAGGGAGGAACATTGATACATTCATTGAAGAAAGGTGGTAAAGATGCTGGAGTGCCATGAGGAATGACTGTTGGAATCAGAAAAGTTTAACCTAAAAGGAAAAGATTAATGGGGAGATATGAGAATTACTATGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCGGACTGTGCAACCCCATAGAGGCAGCCCACCAGGCTTCCCTGTCCCTGGTATTCTGCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTTGTGTCCAACCCTCAGCGACCCCATGGACTGCAGCCTTCCAGGCTCCTCCGTCCATGGGGTTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCACTGCCTTCTCAGGAGAATTACTATACTTTAGAGAAATTCAGTTATTGTTTCTGTTGTTGGTACAAACATTCGTTGAGAATTGCTATGTGCCCTTTCCTACTCACATAATTCATAATTCCATCTTAAGAGGTGAGTATTGTTATGTCTGTTTTGTGGAACAGGAATCTGAAGCACAGAAAGGTTTGTTAACTTGCTCGAGTCATACAAATAGTGAATGGTGTCGCTAATATTGGAACCTAGGGCTGTTTGCCAGTGTAATAATAGATTCTGCCTAATTATGGGTGTAAAAAATTAGTTATCCTTTTTGTCCACCAAAGCTAACAAAAGCTTTCAGCACTACGGGCAGTGATATTCCAGTAATAAATCTCTGCCTCATGAGACAGCCAAAGGGAGAGTTATTTCTCCTGGGGTAGTCTCTCCTTCATGTTTTCTTTAGGATGAAACCCCGTGTGTTGTGGCAACTAAGAACCACCTGAATAAATCAATAATCACTGTGCTTTCTAG
Seq C2 exon
CATAAGGGTAATGCTGCTTCAAGTTTCCATGAAGAAAACCTTATCTACAATACCCTGGACCTCTTCTTTGCTGGAACAGAGACAACTTCAACCACCTTGCGCTGGGGTCTGCTCTACATGGCCCTGTACCCTGAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085:ENSBTAT00000056737:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.4=100)
A:
NA
C2:
PF0006717=p450=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAATGTCTTTCCAAGGATAATG
R:
CTTGGATTTCAGGGTACAGGGC
Band lengths:
318-2310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]