HsaINT0044315 @ hg19
Intron Retention
Gene
ENSG00000134716 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:2634]
Coordinates
chr1:60373458-60375632:-
Coord C1 exon
chr1:60375456-60375632
Coord A exon
chr1:60373600-60375455
Coord C2 exon
chr1:60373458-60373599
Length
1856 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCAAACATTGTGTTTTCTAGCAC
3' ss Score
7.35
Exon sequences
Seq C1 exon
CTCTACAATGTCTTTCCATGGATAATGAAATTCCTGCCTGGACCCCACCAAACTCTCTTCAGCAACTGGAAAAAACTGAAATTGTTTGTTTCTCATATGATTGACAAACACAGAAAGGATTGGAATCCTGCAGAAACAAGAGACTTTATTGATGCTTACCTTAAAGAAATGTCAAAG
Seq A exon
GTGAGAAAACCAAAGTCATTTTGTATTTTGTTCTTAGAGCACAAATAGAGGTATATTAGTTTCCAACTGCTGCTGTAAAATATGATCACAAACTTGGTGCCTAAAATAGCACAGATTGATTCTCTCACAGTTCTAGATATCAGAAGTATGAAATCAGCTTCACTGGGTTACAGATAAGGTTTTGGCTAGGCTGGATCTCTTTGGAGGTGCTGGAGGAGAATCTGTTTCTATTACTTTCCCAGCTTCTAGGAGCCGCCTATGTCCCTTGGCCTGTGGTCCCCTCCTTCATCTTCAAAGCCAGAAGCACAGCATCTTCTCTTCTCTCTGGTATCTGCTTCCATCCTGACATACTTTCTCTCTGACTTTGACCCTCTTATTTACCTCTAATAAAGACTATTATGATAACACTGGGCCCACTGGAATGTTCCAGGATAATCTGCCCATCTCAAAATCCTTAACCACATCTGCAAAGTTCCTTTTTCCCTATAAAGTAACATCCCTAGGTTCCAGACATTAGGATGTGAATGGATATCTTTGCGGGTCATTACTCAGCCTGCTACAGGAGTAAAAATAGGGGCAATATTTCAGAAAATGTAGGGTAGCATTAACTCAGGATTGATGATGCAATTAGAGATAAAGACAAGGGTTAATAGCATTTGGTTTGAGGTCCTGTGAATGCCCAAATACAGCCCTTTCATCCCCCATCCCCTACCCTTTACTGTTATTTGGAGGTATACACAAAGGGGGAACATAGCAGTTAATCCTCAAAGCTCTGTTCTATCATTAGTTGGGCCTAGACCCAATGACCTACCATTTTCGCAGCCCTCATAGAGAACACAAGTAAAGCTGAGTTGGATGCCAGAGTTTAAAGGCCAACTTTATTAAGGCCTGAGTTGGACTTTGCCTTCCCTTCTGTTTTGTACCTTTCACTTTCCAACATTATAGGCCAGAGGTGAGGAAGAAACCAAATGGGATGCGTGACCTTTAACACAGTTACCCCTCTGGTTAACACATATCACTGCATCAATACTGTCATCTTTACACATCAGGAATTGGGTCCTACTTCTGGAGTGGAAAGAATGGTGGATTTCTTTCCCTCTTATTTCACCTTATTGGTATGACATTTATAGAAGTATTGTTTTCTCCTCAGAGGAGGAGACTCGCTATATGTTGTGCAGGTAAGGAAGGGATCATTAACATTAAGAGCAACATTGGACAAATTGAAGTTTCCAGAAGATGATGGTAAAGATGACAGAGTATCATGAGGAATGGTTGGTAGAATCAGTGAGTTTCAAATTGGAAAGAAAAAGGTGAATGAAGAGATATGAGAATTGTTGTTCATAAGAGAAATTCCATTTGCCTTTTCTGTTATCAGTACAAATGTTTGTTGAGTATTTGCTCTGCGTCCTTGCATTCATATAATTCATAATGCCCTCTTAAGAGGTGTGCACTCCTATTTCCAGTATATAAAACAGGAAACTGAAGAACAGAGAGGTTAAGTGACTTGCCCTAGGTCACACAGCTGCTAATTGAAGTGGTTAATATTGGAAGCCAAATCTGTCTCGTTCACATCCCATTCTCCTTTCACTGTACTAAAAGCTTCCCCAAAATTATAGGCATAAGAAAATAATTGTCTTGATTTTCATCCATCCAAAGGTGTCCAGCACTTGGGGCAGGACAATGCTAATGATATTGCTGTAATAAGAGTCTGCCTTCTGAAGAGGCCAAAGGGAAAATTGTTTCTTTTGGGGACCTTTTCTTCCAAATGTCCTCCTAGGATGAAGCCCCTTTGTGTTACGGCAATCAGGAATCCTCTGAATAAACCAATAAATAACATCAAACATTGTGTTTTCTAG
Seq C2 exon
CACACAGGCAATCCTACTTCAAGTTTCCATGAAGAAAACCTCATCTGCAGCACCCTGGACCTCTTCTTTGCCGGAACCGAGACAACTTCCACAACTCTGCGATGGGCTCTGCTTTATATGGCCCTCTACCCAGAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134716-CYP2J2:NM_000775:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAATGTCTTTCCATGGATAATG
R:
CTTGGATTTCTGGGTAGAGGGC
Band lengths:
318-2174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)