MmuINT0045097 @ mm9
Intron Retention
Gene
ENSMUSG00000015224 | Cyp2j9
Description
cytochrome P450, family 2, subfamily j, polypeptide 9 [Source:MGI Symbol;Acc:MGI:1921769]
Coordinates
chr4:96244283-96246254:-
Coord C1 exon
chr4:96246078-96246254
Coord A exon
chr4:96244425-96246077
Coord C2 exon
chr4:96244283-96244424
Length
1653 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
AAACAAACACTCTTTTCCAGTAC
3' ss Score
3.73
Exon sequences
Seq C1 exon
CTTTACAATATCTTTCCAAGGATACTTCAGTATCTTCCTGGATCACACCAGACACTTTTCAGAAACTGGAGAAAACTGCAATTGTTTGTTTCCGATATTGTTAACAATCACCGGAGAGACTGGGATCCAGATGAGCCGAGAGACTTCATTGATGCTTTCCTCACAGAAATGACAAAG
Seq A exon
GTGGGAAGATGCCTGCTGTGTTGTTTTCTGATTGCAGAAGCAGCAGCAGTTTAGTGGTTTTCAGTTGATTCTACACCATGTTTCCCTGAGCTTATTGGTTTGGCATGGCACAGATGTGTTTTATCACAGTACTATATGACCCTTGTATACCTGTTGGCCAGGAAAGCTTTGCGTGGAAGTAATGAAAACTCAATTCTGACTCTACGGGACACAGATCCCTTTTGCTATGCCTCCTTCCTTCATCTTCAATGCCAAGACTGTAGCATCTATTTCTCCCTGATCACTGCTGCCATCTTTATATTTCGTCTCTTTGATTCTGAACTTTGAGCTCTTATAAGAATAATTCCCATGTACAATATTAACTATGGAGTCTTAAGCAATATGCGCAGAAATGAATAGATATACATCTGTGGAAAATTACATAGCACACTACAGGGAAATTAAATGAAAAGGATGTAGTGCTTATGAGGTATATGTGGCATTTATTTAGGATTATTAGGGTCATTAGAAATAGAGTTCTAAGCCATTTGTTGGGAGGCTGCGATAATGCTATCTTTATATGTCTCTTAGCTTTTATCCATATGTGAATGAACTGTGTCATAAATGAAAGCTCCAATTAAGCTTCAGAGTCCAATTAAATTTTTCAAGTTTGTCTAGGGCCAGTTACTGACTTCATCTCACACACCACTGCAAGACAAAACATAATAGAGCTGAATGCTGAAGTTTAACCTTAATGGTTAAATGAGGTCCCCTAACTCCAATAAACAGTATCCAGTAATGCACAAGAGGCTAGACAGTGGTCGGTTTGTTGTGGTTGTTACTTTTGCATCATTATGATAATACCTGGCAAAAACAACACAAAGGAGATTTCTTTTGGCTCACAGTTTCAGGAATTTGGTCCATTACTGCAAAGAAGGAAAGCCAGGCAAGCTAAGCTTAAGGTAGCAAAACATGATGCTATATTAAGATACAGGGACCAAGGCAAGATCTGGGGCCTGGTGATAACTTTCAGAGTCCTGCCCCTAGTGACTGGATGCAAACAGTTATAGCCACCCCGCAATGTTATAGAACCTCCAGAAATACTTCAGATGACTAGATACCAAGAATCCAAAACATAAGCCTTTAGTAATTCTGAAATTTCATTATAGGTCCAAACCGTATCACAAAATATACATTATAGGTCCAAACCGTATCACAAAATATACAGCCTCGATGTCACCTGACCTCTTACTGGGACACATTAGTGGATTAGTAGTGTAAGTGTGGATAAATTGGGTTCCTTCTCTGACCAAGGGCCAAATAGCAATTTTTTTCATCCTCTCTTTTATTTCATTTGTCTTGGATAATATTGATAAAAGCAATATTGTACTTTTTTTTTTCTTTAGAGGAAGAGACTTAGTGATGTGGCTGATACTAGAAGGCAAATATAATTTTTCTATCCCATTTTCTTATCACAGGTCAAAGGTTTTACAAAGTTTAATGAGAAAAAAAAAATAGTTGCAGTGATTTTTATCCACCCAAATGCTATAGTGATTTGGTCAGCTTGCTGCTCTAGGGGCAAGAAAGTGTTTCAGGAGACAGTCAAAGGGAATATCACTTTATATGAATCTTTGTAAATTCAAAACCTCTGAATAAACAAACACTCTTTTCCAG
Seq C2 exon
TACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGCACTCTGGACCTCTTCTTTGCTGGAACAGAGACAACATCTACAACACTGCGCTGGGCTCTCCTCTGCATGGCCCTCTACCCAGAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015224-Cyp2j9:NM_028979:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGTATCTTCCTGGATCACACC
R:
TTGGACTTCTGGGTAGAGGGC
Band lengths:
294-1947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: