GgaINT0039181 @ galGal4
Intron Retention
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25613734-25614413:-
Coord C1 exon
chr8:25614237-25614413
Coord A exon
chr8:25613876-25614236
Coord C2 exon
chr8:25613734-25613875
Length
361 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACTGTCTTTTTTTATGCAAGTGT
3' ss Score
4.15
Exon sequences
Seq C1 exon
CTGTATAATGCTTTCCCTCTGATAATGAGATGGCTACCAGGGCCCTTCAGGAAGATATTCAGGCACTGGGAGAAACTGCAGCGTTTTGTGAGGGGAGTGATTGCAAAACACAAGGAGGACTTGGACCAGTCTGACTTGGGAGATTACATTGACTGTTACTTAAAGGAAATAGAAAAG
Seq A exon
GTGAGAGTGAAATACCTATGGTCACCTAAAGCTTAACCCCAAAAATGAGCAGACAAGACTCAAGGCAACTTTGTTAGATGGGCTTTTTCCTCTCTTACCTCTTTCATGTCAGATTTTTTAGCAGCAGCAGGAGTCTGATCGCTTTGAAAACACATAGATTTTATATATATATATTTTTTTCATTTGGAAGTATTTACACTTTATCTTCTATTTCTCATTCTGTCAAGTGGTATAGGAGGGCTCTCAGGGAACTTATTTATGTTCCTATGAGAATTTGCAGGAGGGTGTTTGGGTATTTTGATTGAGTTTTTGAAAGCATCTCTTCCCTAACAAGCACTTCCACTGTCTTTTTTTATGCAAG
Seq C2 exon
TGTAAGGGTGACACCAACTCCTATTTCCATGAGGAAAATCTGCTCTGCTCCACACTGGACCTCTTCTTGACTGGGACAGAGACAACAGCAACCGCCATCCGCTGGGCTCTGCTCTACATGGCCGCGTACCCCCACATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413:ENSGALT00000018621:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.2=100)
A:
NA
C2:
PF0006717=p450=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATAATGCTTTCCCTCTGATAATG
R:
CCTGAATGTGGGGGTACGC
Band lengths:
318-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]