DreINT0054297 @ danRer10
Intron Retention
Gene
ENSDARG00000018485 | cyp2v1
Description
cytochrome P450, family 2, subfamily V, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040912-139]
Coordinates
chr20:25657383-25657820:+
Coord C1 exon
chr20:25657383-25657559
Coord A exon
chr20:25657560-25657678
Coord C2 exon
chr20:25657679-25657820
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TTGTTTTTGTTTTTTTACAGAAG
3' ss Score
10.39
Exon sequences
Seq C1 exon
CTTTATGCTGCTTTTCCTCGTCTTATGGACCTCCTCCCAGGACCTCATAAAGAGCTGTTTTCCTGCTTCCACCAAGTTCGTGCTTTTATTAAGGAGGAGGTGGACAAACATCGTGCAGACTGGGACCCCTCTTCACCTAGAGATTTTATAGACTGCTATTTGACTGAAATAGAGAAG
Seq A exon
GTACTATCTATCCTTCTCTGAGCATTTCCATGGCCTGATTATTGTTAAAGATGGTGAAATATTGCACTTCTTTTAACCTAACTTTGCTGGTTGTTTGTGTTGTTTTTGTTTTTTTACAG
Seq C2 exon
AAGAAAGATGATTTGGAAGCAGGATTTCATGATGAGGGTCTGCAATATGCCGTTCTTGATTTGTTTGTGGCAGGAACTGAGACCACATCTACCACTCTACTGTGGGCCTTTGTGTACATGATGAAATATCCAGAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018485:ENSDART00000102913:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTATGGACCTCCTCCCA
R:
GATGTGGTCTCAGTTCCTGCC
Band lengths:
248-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]