RnoINT0044345 @ rn6
Intron Retention
Gene
ENSRNOG00000008988 | Cyp2d2
Description
cytochrome P450, family 2, subfamily d, polypeptide 2 [Source:RGD Symbol;Acc:2471]
Coordinates
chr7:123653024-123653520:-
Coord C1 exon
chr7:123653344-123653520
Coord A exon
chr7:123653166-123653343
Coord C2 exon
chr7:123653024-123653165
Length
178 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
AGCCCTTTCTGCCTGTCCAGGCC
3' ss Score
7.92
Exon sequences
Seq C1 exon
GTGCTGAACGCAATCCCAATTCTCCTTCAGATTCCTGGGCTGCCTGGCAAAGTCTTCCCCAAGCTCAATTCATTTATAGCCTTAGTGGATAAGATGTTAATTGAGCACAAGAAAAGCTGGGATCCTGCCCAGCCGCCCCGAGACATGACTGATGCCTTCCTAGCAGAGATGCAAAAG
Seq A exon
GTGATTGGAAGCTCCAAGAGATGTAGCCAGGGATTGTGTGCTGTGGTCTTCTGAGCAGTGAGGTCAGATGTGTTCCTCTGTATCACTAAGTGACTCAGTCCCTATGCTCCCAAGGAACAATAGGAGGCCATGATGGGACTTCCTTTCCCTACTGAACCAGCCCTTTCTGCCTGTCCAG
Seq C2 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAAAATCTGCGCTTGGTGGTGATTGACCTGTTCATGGCGGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTTCTGCTCATGATCCTGCATCCAGATGTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008988:ENSRNOT00000012413:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGTCTTCCCCAAGCTCA
R:
CAGGATCATGAGCAGAAGGGC
Band lengths:
257-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]