GgaINT1002719 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C495]
Coordinates
chr14:2256139-2257182:+
Coord C1 exon
chr14:2256139-2256312
Coord A exon
chr14:2256313-2257043
Coord C2 exon
chr14:2257044-2257182
Length
731 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
CGCTTGTCCTTTTCCAGGAGAAA
3' ss Score
-9.56
Exon sequences
Seq C1 exon
TATTTCAATTTCTACCCATTCCTTGGATTTCTTTTCAAAACCCACAAGATTTTGCTTAAGAAAATAGAAGATGTGCGTGTCATTATAAGGCAATACATGAAGGCGAGCAGGGAAGATATCAATGAGAACAGTGTAAGGAGCTACACTGATGCCCTGGTATTCAAGCAGCATGAG
Seq A exon
GTACGGGATTGCTTGGGCTCTGCTGGCTGTTTGCAATGTCTTCTTTTCTAGCTAAAACAGTTGTGGATCTGGATTTCAGCCCTGTCATGTAGCCCTACTGAAATTAATGCTATTGTTCTCGTGGCACTGAAATCAGATTCCAGTCTTGTACGGTTGGTGTACTTTACTGCAGGGATTTTTCTATCAAAACTGAGATGTGAAAGTCATTCTCTCAATCCATTCCCCAAATAGCAGTGCTAATAATGTGACATGAAGTCCTTGTTTGTAGTAGAAAATGCATGAACTCACACGTAAGCTGACTGTGCTTTTCTTTTCATGACAACAAATCAATTAATCATTGATACTGTTGCTCTAAGATGAACGATACACTTAAAGTACTGGAATGATAAATGGTCAGTACATTTGCGAGCCCAGCCCTGCATCTTACTTTAGTAGAGACTGCAATTTCACACATCAGTTGATTTCATTCCACACAAAGTATTTATGCTCTGAGTCTTTTCTTTCCCACTGGATCTGGGCCAACGTGAGGCATTAGTCTTCTTCCCATCACTGTGGAGGAAGGTTCAGTGCAGCCTCCTAAGGCCCAGGAGAAGCAACATCAGACCTTTCACCAAGCTGCTCTCAAACACACGATCATACCCAACAGTCTTCCGGGTTATAAAGTATTTCCCAAACTTGCTGAATACGAATACTATTCTAAGAGCTTTCTCACGCTTGTCCTTTTCCAGGAG
Seq C2 exon
AAAAACAAGAAAGACAGCCTCTTCCATGATGACAACTTAATAGCATCCATACTTGACCTGGTCATGGCGGGCACAGAGACCACGGCCACCACGCTGCAGTGGGCCATCCTGCTGATGATGAAATACCCAGAGATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAATTTCTACCCATTCCTTGG
R:
TTGGATCTCTGGGTATTTCATCA
Band lengths:
310-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]