HsaINT0044339 @ hg19
Intron Retention
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:20243]
Coordinates
chr7:1026260-1026881:+
Coord C1 exon
chr7:1026260-1026433
Coord A exon
chr7:1026434-1026742
Coord C2 exon
chr7:1026743-1026881
Length
309 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCTGCCCCACGCCTCTGCAGGGG
3' ss Score
8.62
Exon sequences
Seq C1 exon
CTGTTCAACGTCTACCCATGGCTCGGGGCCCTGCTCCAGCTGCACCGGCCCGTCCTGCGCAAGATCGAGGAGGTCCGTGCCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTGTGCCCGGGGGACCCCGTGTGCAGCTATGTGGACGCCCTGATCCAGCAGGGACAG
Seq A exon
GTGTGTCGGGACCCAAGACCTCCTTGAAGGCCTGTAGGGGTCCTGAGGGACACCCCAGGGGAGCACGGCTGGGGAGGGGTCCATACCGGTCCTGCACCAAGCTCCCTACCTCCTGGCTGGGGGCCTCTCAGAGCCTCAGTCTCCTTGTCTGTGAAACGGGGCATCCATAGTGCCTGCCTCGGGGACGCTGAGGGATGGCTGAGCCCAGATCACCGGGGCATCCATAGTGGAGCCCAGGGCTGGGCTGGGTCTGTGGGGTGGGGGACAGACCCCAGATCATCCCACGAGCCCTGCCCCACGCCTCTGCAG
Seq C2 exon
GGGGATGACCCCGAGGGCCTGTTTGCTGAGGCCAACGCGGTGGCCTGCACCCTGGACATGGTCATGGCCGGGACGGAGACGACCTCGGCCACGCTGCAGTGGGCCGCACTTCTGATGGGCCGGCACCCGGACGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067-CYP2W1:NM_017781:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAACGTCTACCCATGGC
R:
GGCCCATCAGAAGTGCGG
Band lengths:
294-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)