MmuINT0045130 @ mm9
Intron Retention
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139831508-139832142:+
Coord C1 exon
chr5:139831508-139831681
Coord A exon
chr5:139831682-139832003
Coord C2 exon
chr5:139832004-139832142
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TCTGACCACCCTCCCTGCAGGAA
3' ss Score
11.53
Exon sequences
Seq C1 exon
CTATTCAACACGTTCCCCCGGCTGGGGGCCTTCCTGCGGTTGCACAGGCCGGTCTTGAGCAAGATCGAGGAGGTGCGCACCATCCTGAGAACCCTGCTGGAAACGCGGAGACCACCCTTGCCAACGGGCGGTCCCGCGCAGAGTTATGTAGAAGCTCTGCTTCAGCAGGGCCAG
Seq A exon
GTGTGGACAGGGCCAGGGCTTCATCGGAGACGGGGGTGGTGGTGGTGGTGGGGTGTTGGGGGCCCCAGTTCACAGGAGGGGAACTATGGAGGGCTCTTCCCCATCTGTTGACCTCTGGGAGTCCCAGTCTCCTCTATCAGATTGGCCCCTGTGAATACCTGGAGTGGGCACTGATGTTGGGTGAACCCCCAGTAAACACCAGTGCTTTCCACCCAGCCTGATCTCTGCCCAGCCTCCTCTGGGTCCTGGAACTAGGCTGGGGCTACAGGTTGGGGTTGGATCCTCCTAGATTCGAGCCCAGTTCTGACCACCCTCCCTGCAG
Seq C2 exon
GAAGATGACCCTGAGGACATGTTTGGCGAGGCCAATGTCCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACCACGGCGGCCACGCTGCAGTGGGCCGTCTTCCTGATGGTTAAGCACCCACATGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541-Cyp2w1:NM_001160265:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTCAACACGTTCCCCCGG
R:
TAACCATCAGGAAGACGGCCC
Band lengths:
295-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: