HsaINT0044339 @ hg38
Intron Retention
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450 family 2 subfamily W member 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr7:986624-987245:+
Coord C1 exon
chr7:986624-986797
Coord A exon
chr7:986798-987106
Coord C2 exon
chr7:987107-987245
Length
309 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCTGCCCCACGCCTCTGCAGGGG
3' ss Score
8.62
Exon sequences
Seq C1 exon
CTGTTCAACGTCTACCCATGGCTCGGGGCCCTGCTCCAGCTGCACCGGCCCGTCCTGCGCAAGATCGAGGAGGTCCGTGCCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTGTGCCCGGGGGACCCCGTGTGCAGCTATGTGGACGCCCTGATCCAGCAGGGACAG
Seq A exon
GTGTGTCGGGACCCAAGACCTCCTTGAAGGCCTGTAGGGGTCCTGAGGGACACCCCAGGGGAGCACGGCTGGGGAGGGGTCCATACCGGTCCTGCACCAAGCTCCCTACCTCCTGGCTGGGGGCCTCTCAGAGCCTCAGTCTCCTTGTCTGTGAAACGGGGCATCCATAGTGCCTGCCTCGGGGACGCTGAGGGATGGCTGAGCCCAGATCACCGGGGCATCCATAGTGGAGCCCAGGGCTGGGCTGGGTCTGTGGGGTGGGGGACAGACCCCAGATCATCCCACGAGCCCTGCCCCACGCCTCTGCAG
Seq C2 exon
GGGGATGACCCCGAGGGCCTGTTTGCTGAGGCCAACGCGGTGGCCTGCACCCTGGACATGGTCATGGCCGGGACGGAGACGACCTCGGCCACGCTGCAGTGGGCCGCACTTCTGATGGGCCGGCACCCGGACGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067:ENST00000308919:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAACGTCTACCCATGGC
R:
GGCCCATCAGAAGTGCGG
Band lengths:
294-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development