RnoINT0044439 @ rn6
Intron Retention
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17384029-17384664:-
Coord C1 exon
chr12:17384491-17384664
Coord A exon
chr12:17384168-17384490
Coord C2 exon
chr12:17384029-17384167
Length
323 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTTC
5' ss Score
0.53
3' ss Seq
CAGTTCTGACCACCCTCCTGCAG
3' ss Score
-6.78
Exon sequences
Seq C1 exon
TTATTCAACACGTTCCCCCGGCTGGGGGCCTTACTGCGGTTGCACAGGCCAGTCTTGAGCAAGATCGAGGAGGTGCGCACCATCCTAAGAACCCTCCTGGAAGCGCAGAGACCACCCTTGCCAAACGGCAGTCCGGCGCGGAGTTATGTGGAAGCTCTGCTTCAGCAGGGCCAG
Seq A exon
GTCTTCATCAGAGGCAGGGGTTGTGGGGGTGCGGGTGGGGGTCGAGCGGGGGTGTTGGCGGCCCCAATTCACGGGAGGGGAATTGTGGAGGGCTTTTTGCGACCTGCTGGGACCTCTGCGAGTCTCAGTCTCCTCCTTTATGAGGCCTGGCCCCTGTGAGTACCTGGAGTGGGCACTGGGGTTCGGTGAATTCCCAGTAAATGTTAGCTCTTTCCACCCAGTCTGACCTCTACCCATCCTCCTCCTGGTCCTGGGACTAGGCTGGGCCCACAGGTAGGGGTTGGATTCTCAGAGATCCAAGCCCAGTTCTGACCACCCTCCTG
Seq C2 exon
CAGGATGACCCGGAGGACATGTTTAGCGAGGCTAATGTTCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACTACGGCAGCCACACTGCAGTGGGCAGTCTTCCTGATGGTTAAGCACCCACACGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770:ENSRNOT00000091003:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTCAACACGTTCCCCCGG
R:
GTGCTTAACCATCAGGAAGACT
Band lengths:
300-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]