DreINT0054266 @ danRer10
Intron Retention
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25692066-25692492:+
Coord C1 exon
chr20:25692066-25692242
Coord A exon
chr20:25692243-25692350
Coord C2 exon
chr20:25692351-25692492
Length
108 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCTTGTTTATGTTGTTCAGCAT
3' ss Score
4.99
Exon sequences
Seq C1 exon
CTCTATAACATGTTCCCGTGGCTCATGCAATTGCTGCCTGGACCACACAAGAAACTTATTACTCTGTGGCAGAGGGTGACTGACTTTGTTCGAGAGAAGGTGAATGAACACAGAGCGGATTATGATCAATCAAGTCTTCGAGACTACATTGACTGCTTTCTAGCTGAGATGGAAAAG
Seq A exon
GTAAGAACCATTCTGAGGAGGCATCAGTAATTGCTCTAGTATGTGAACACTCTACTAATGATGAAATATGGTTGTTGGACGGAAATGCCTCTTGTTTATGTTGTTCAG
Seq C2 exon
CATAAAGACGACACAGCTGCTGGTTTTGATGTGGAGAACTTGTGCATGTGTACTCTGGATCTGTTTGTAGCAGGAACTGAGACCACCTCCACCACTCTGTACTGGGGTCTTCTCTACATGATAAAATATCCTGAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990:ENSDART00000134047:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGACCACACAAGAAAC
R:
GTACAGAGTGGTGGAGGTGGT
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]