MmuINT1008072 @ mm10
Intron Retention
Gene
ENSMUSG00000075517 | Cyp2d37-ps
Description
cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene [Source:MGI Symbol;Acc:MGI:3721937]
Coordinates
chr15:82689975-82690499:-
Coord C1 exon
chr15:82690362-82690499
Coord A exon
chr15:82690224-82690361
Coord C2 exon
chr15:82689975-82690223
Length
138 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTTGTCTTGCTCTGTCCTAGGCA
3' ss Score
8.86
Exon sequences
Seq C1 exon
TTGGCTGACAAAGTCTTCCCTGGGCAAAAGACATTTCTCATAATGGTGGATAAGCTGGTGACTGAGCACAAGAGGACCTGGAACTCGGACCAGCCGCCTCGAGACCTGACTGATGCCTTTATGGCTGAGATGGAGAAG
Seq A exon
GTGAGAGAGTGTGAGATCTGGTGTTCATTGCACTGACTAACCCAGTGAAACCAAATTGTAACCACCTGAAGTCATTGGGTAGGTATTACTGGGGCACGCTAGCCTCTACACTGACTCTGTTGTCTTGCTCTGTCCTAG
Seq C2 exon
GCAAAGGGAAACCCTGAGAGTAGCTTCAATGATGCAAATCTATGTCTGGTTGTCCTTGACCTGCTGGGTGCTGCAACTGTGACCACCTCAACCACACTGTCCTGGGCCCTGCTGCTTATGATCCTGCATCCGGATGTGCAGTGTGAGCCTGGCTGGGGCTGTCAAGAAAGGAGGAGGAGGGTAGAGGCAAACTCCTTAAACTTACTTGGGACACTTGTAGATCCCAGCATTGAGTTAACCCAGACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075517:ENSMUST00000100380:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(37.8=96.9)
A:
NA
C2:
PF0006717=p450=PD(59.8=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACTGAGCACAAGAGGA
R:
CTCCTTTCTTGACAGCCCCAG
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types