MmuINT0044915 @ mm9
Intron Retention
Gene
ENSMUSG00000067231 | Cyp2c65
Description
cytochrome P450, family 2, subfamily c, polypeptide 65 [Source:MGI Symbol;Acc:MGI:1919553]
Coordinates
chr19:39165118-39168438:+
Coord C1 exon
chr19:39165118-39165259
Coord A exon
chr19:39165260-39167812
Coord C2 exon
chr19:39167813-39168438
Length
2553 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TCTGTGTTTTTTATTTGCAGGAA
3' ss Score
11.78
Exon sequences
Seq C1 exon
GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG
Seq A exon
GTAATCAAAATCATTTCCTGGTCTTTTGAATCTTACAATATTTCCAACCCCTCTTTCACAATACTCCCTGAGGCTTAGCTTCAGGAGTTGTGTTAGAGATGTATCTGCTGGAGCTGTGCACCCAAATGCTCAATTGACCTTTGCATTTTTATCAGTTATGGATTTCTATAAGGGTTTCTCTTTGTTGCAAAGACAAGTTTCTTTGATGAATGTTAGACAGACACTTGCCTGCAAATATTGATAAGTAGAACCATGACCTCATTATGTCAGAGAAGTTGAGTAGGTTTCCAGTACCTGCCGAGGGGGCTTTAAGCCCAGTTAGACAGCCACTGTTTACCAACAAGATGCATGTGTGCCATTATCGAACCCTTAGGGATATTTTGACATTCTTTGCATTATTGTGGATCATCAATATCACAGCAAGGTAGGAATAGTGATTGCCAACTTCCCTTATGAAATTGTGTCTCCTAGAAATGACAGGGAAACTTGACCCATGATATACTGTTGCCTAAGAAAGACCTGAACATGTACAGCACCAGTAGGTAACATGAAACAGTGAAGTCTCATGGGGCTCCATTCCTAAACAAAGAACTACAGGCAACTAAAGAATGCTAAGAGTGGGAAAAAAAAACTTTCTTCCCATTGATGAACACTAGTTTTTACAATACTAATGATTAGCTTTTAAATCATATGCATACAAGTAACATTAGTGGACTCAGCATGATGTATTTTTATATCTATATACACAAATGCTACATATATATTTAATTATATGTATATATACATATATATACACACAACACACACACACATAATTTGTATGTAACAATAACATAAAGAAAGAGATCACAAATTTGAGAAGGACCAAGCAGTATATGTATAAATTTACAGAAAGTAAAGGGAAGGAGTAAATTATGTAATTATATTTGAATTTCAAAAAACATTTTTTCCAGGTAACAGAGTAATTTGTTTGTATCCTTTGAAACTTTCCAACTTACATGTATTTTCCTTTGGGATAGTAGATTAGCTTTCATGTGACCATCACTCACAATGCCCATGCACTTTGTCTGAGACAAAACATATCTGCTGGTCACATTAGTGGGACTTTAGAATGTTGACTTATCCTTTCCAAACTCACCAACCTAAACCATAGCGTGGTTGGACTGTGTGTCTAGATTTATCATTAAGCTACTATAGAAGTTTTCCTAGATAGTAGGACACCTTTTTGTCTGTGAGAAAGGTAACCAGTCCCATGATAGCTCACTCCTTGGTATCAGTCTTCTATACAAGTTGCTTTTCTTGTTTTTGTGTACAAATGCTGGTTAAGAAGCACCTTAAGAGTTTATTTCTGCTTAAGGTTTGAGGGAAGATCGTCTATAATGGAGGAAGAGACATGACACAGAAGTCCCAGTTTGGGCAGGGAAATGATGGTTCCCTAATAACAGCACACTGTCTGCTGCTGGAACTACAGAAGGGAAGAAGTCAGCTCATGTTACTTGGTGGGAGGCTTGGGGAACAGGCAATATGTAGCTATGGGGTGTCTGGAAAGATTCACCTCACATCTAGGCTGAATATGAAACAGATTGGAGTCCAGAAGATAGAGAGACTATAAACCTTCAATAAACATCTTCAGTGACTGAGTTTCCATCCTTAGCTCCACCTACTAAAGTTTCCACAACATTATAAAACAGCATTGCCAACTATGGAATATATATTTAGTTAAATACATGTGGCAATGGAGGACATATTGTATTCAGTACACAGCACAGATACTTTTGTAAGCAACTGTTTCTGATGACTACCTACTGTCCATTTATAGCTGTGGACTTGTAACCATTGTGACTCAGTTTGCAAAGATGTCAGATTCTCCAGTCCCCAGAGTAGTTTAATTTTTACATTTGAGGAATATTCTCAATATGGCTTCTGGCTATAGTACTCAGTATTTGCTAGGAGATACATGAAGGTTTTCTTTAAAGCTCCATGGTTATGAGGTGTCATGGTTGCTTCTTTAAAAGATTTTTTTTTTTGGTTTGGTTGGAACCTTCTGTCCATGTTGCCCCACTTTCTCTTCTCCCTTTCCCCCCTCTGTTGGTAGTCTTTCACATTATCCTGATATTTCTTCCAAAGCAATAGTATTTTGCCTCTTATCCTGTATTCTTCGTATTCTCTGGAGTACACCATCTTTCCTTTTGTGCTTCATTAAATACCAGGGTTTACCACAGGTACCCACTTCCATGAGAAGTTAAATAAGTGTTCCTTTGTTTTCATTGGGTGAATTTGAAGTCCTGTGTTCAGTGCTGCTATTTCACCTTCTAAAGCTTTTTGTACACCTACTTTAATACTGTATTTCCTAGTATTAGTTGTGGAGAAGGTATGTCAATAATTTTTATATTTATTCATCCAAATGACCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATATCAAAGAATAACATAGATTCTCTTTTATTACAGTTGCAAGCACAGTCCTTATTCCAGTAAGCACCATGAGCTAATTACATTCTGTGTTTTTTATTTGCAG
Seq C2 exon
GAAAACGGATTTGTGTGGGAGAGGGTCTGGCTCGAGCAGAATTATTTTTATTCCTGACCACCATTTTACAGAACTTTAACTTGAAATCTCCAGTTGATCTAAAAGACCTTGATACTACTCCAGTTGCCAATGGATTTGCTTCTGTGCCACCCAAGTTCCAGATATGCTTCATTCCCATCTAAATGGATTTCCCCCTAAAGCTCTTTCCTTGAGGGTATAGCTTACCTCTTCTGTCAGGCATGTCTCTCTGACCCTATCACCAGAGTTCTGGGATTCCATATATAGCCCTGCACAAACTGATCTATGTCCTTCTTTATACATAAGACAAAATAGTAATAAACTGAAATAATGTCCCAAGATGTTTCTTCACCATAATACACACAAAGGAAGCATGACATCTCTGGCCATCTATCTCTTAAAGATACAGGAAATGCCTATCTTCTATTTAAGGCAATTATTAGGGTTACTGCAAAGCAAGTCTGCAATTCCCTATGCTATGCAATGATTTATTGATTTCAGCCCTGTTCTTATCTGATGGTGAACTACTAACATATTATTATCTTAAAACTGAGAAATATGACAGTTTTAAAGCACTGTGCGTTTTAAATAAAAGTATTATAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067231-Cyp2c65:NM_028191:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: