BtaINT0046188 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037795 | CYP2C87
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 87 (CYP2C87), mRNA. [Source:RefSeq mRNA;Acc:NM_001076427]
Coordinates
chr26:16063826-16065395:+
Coord C1 exon
chr26:16063826-16063967
Coord A exon
chr26:16063968-16064878
Coord C2 exon
chr26:16064879-16065395
Length
911 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTGTGTTTGTTATTTTCAGGAA
3' ss Score
11.13
Exon sequences
Seq C1 exon
GGCACAGATATACTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTCCCCAACCCAGAGGTATTTGACCCTGGCCACTTCCTGGATGAGAATGGCAACTTTAGGAAGAGCGACTATTTCATGGCTTTCTCAGCAG
Seq A exon
GTAACACACATTTATTTTTTTCATTGCTTCAGTGGACAATTTTCCCTTGTGGCTCAGTGGTTAAATAATCCACCTGCAATGAGGGAGACCAGTGTTCAATCCCTGGTTTGGGAAGGTCCCTTGGAGAAGGGAAAGGCTACCTACTCCAGTATTCTGGCCTAGAGAATTCCATGGACAGCACATGGGTTGCAAAGAGTCGGATACTACTGAGTGACTTTCACTTTCAGTGGACAAGGTGCCTTTGGGCATCCTTTGGAACTTCCATAGTGCCCATTCTGTGCCTGGTCAAAATGCTCTTTTCCCATGATGAGAGACAGCAGTACCAATGCCCACACACTTTCCCTCCCTATGAGACATCCTCATTTTTGGAGTAGATTATTGGAGCTTTGGAGAGGTGACCCAGTTCTTTCTAATTCAAAAATAAAATTTAAGCTACATTCTGAAAATACAAGAGAAGTGCATTGTAGACAAAAGTAACTCTGTGTTATAAAACTTTAAAACTTCAAGGTCGATGTAGATTTGATATACTTCCAACAGAGAATAGAGGCTGTGAAGAATGGAAAGAAAGACATTGGACCATCACTAGGAACAAAATACAACCAATATATGAGTATTTCTAGAAAAAAAAATTGATGGGACCTTGAAAATGTCAAAATGGAGTTACAATACACTTAATGAAGTATATGATATAGTTCTGATAACTCAATAAATATCTGCTGAGAGGATACCTGTTAAGATTAGATGTTAGATGGATAACATGAGTGTCTACCCTTTGTCCATCTGTCTATCTAACCATTTGCATTCCATCCATCCATTCAAACATTCATCAAAAAGTTACTGCATAGTCTGTTTCTGGCAGCCAGAAACACAGTGTTCAAGGAGTATGTACTCTCTGTGTTTGTTATTTTCAG
Seq C2 exon
GAAAACGGGTTTGTGTGGGAGAGGGCCTGGCCCGCATGGAGCTGTTTTTATTCCTGACCACAATTTTACAAACATTTACCTTGAAATCTGTGGTTGACCCAAAGGACCTCGACACCACTCCAGCTGTTACTGGGATAGCTAATGTGCCACCTCCTTACCAGCTCTGCTTTATTCCTGTGTGAAGAATGCTAAATTATACAGCTTCCTCAGTGGTGTTGTCTTTAACGCCCTTTCATGGGGGGCATTGTTCACCAGTGTCATGGTAATCTTTCCTGAGAACACATCTCTGACCTCTTCTCATTCCCTGTGCAATTTCACTACAGAAATATATCTGCTATTCTCCCTATCCTGTAACATTTGTATTGGCCATCACATATGCTAATACCTATCTAATATTAAGTAGTAGTGTGTGCCTTGTACCATGTACTCAGTACAAAGTAATGCATGATGATTAATGTGTGCCAATGAGACCTATTTCTCCAGTGCATGTTTTTTCTAATAAAAAGCAGAATCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037795:ENSBTAT00000027159:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATTCCCCAACCCAGAGG
R:
TGACACTGGTGAACAATGCCC
Band lengths:
356-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]