MmuINT1008059 @ mm10
Intron Retention
Gene
ENSMUSG00000025002 | Cyp2c55
Description
cytochrome P450, family 2, subfamily c, polypeptide 55 [Source:MGI Symbol;Acc:MGI:1919332]
Coordinates
chr19:39038100-39042693:+
Coord C1 exon
chr19:39038100-39038241
Coord A exon
chr19:39038242-39042016
Coord C2 exon
chr19:39042017-39042693
Length
3775 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
3' ss Seq
GTGTTGCTTTTATTTTTCAGGAA
3' ss Score
11.75
Exon sequences
Seq C1 exon
GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAG
Seq A exon
GTAAACACAATTTATTTTTATTTTTACTTCAGGTACAAGGTAAACTTTTTGGGGGCACTGTTGTCTAGGCTGACCCTGAACTCAATATTCTTGCCCCATCTGTCTAAGTATTTGACATCATAAACATGTGCCACTAGGCCCGAGTCCACAAGATACAACTCTGAGGTAAAATGGGTTTTCTACCATGTCCTCAGGAACAGGTGGTTTTGCTCTTTGTGCCTCCTCAGGAGCAATTCTCCCAATGCCCATGCATGTCCCTTGATTGTAACACATTTTCTTTGTTCCTCTACATTACTGGCGTTTTGAGAATATCCAGCCTATAATTTTGATTCAAGAAAACTAAAATGTAGGCCATTTGAATTTTGCTTCTGCATGTACTTCTATCTTTCCTAAGTGCTCCTCTTGGAAGTGAACCTCGTTTAGACTTTTCTCAGCTGCATGGGAAAAGCATCTCAATCCATTCCTAGACATCTCTGGGAGCCCAGGTATTTTAGAGACTATAATAGAGACTAGGATCTGAAGAGACTTACTTCTGAGTTAGGGAAGCTGGAAGTCAACAGGACACTGCAATCCAATTGGATTAGTGCTGTGAGAGAGGCAAGCTTGGATTTCTGGGGAGGTGAGGAGGGAGGTTACTCACCTCCTGCTCTTTCACACTCACAGAACTGTTCTGATAGGGCAGAGGAAAGTTGCCTGGCTCTTAGGGAGCAAAGAAATAAGACAAGAAGTGGAGGCAGGGAACTGTACTAAGGAATAAAGTACAGGAGCAGACATTTTCTGCTGTCAGAACTTGACAAGAATAAAGGCTGAGAAAGACCTTGGACATGTAGAAAGGAGCTATGTGGTGATCCCAGAGCCTCTAGGGTTTCCTTTACTTATGATCCTCCACCTTGGAGGTTCAGTCTCACTGCTCCATTCTGTGTGCTGAGTCTCTGCACACAGAGTCACAGTCATTTTTGCCATGTGCTTTTATGACTTTGATGTGGTCTGCATTGTATATTCTCATATGTGACAGACTGGGCCTTTCTGTTTAGGGAACTCATATTTGAGGAGAGAGGCAAAAGATGACACAGCACAATGTTCTAGAGGTCCACATTGCTGTGGAAGCAGGGATAGTGAGGAAACCTTGGGGTCAAGATTATGAAGGATCATATGGCCCTTGAGGAAAGTATCAGAGCAGCATTTCTGAGATAATTGGTGAAGTGTGAAGCTTTGTGGCATTGGAAAATGGGGAAGGGAGCTATGAATGGAAGTGAGGAGGATTAAGCCTGGTATTGAGTTATCAGACAGGAAAGTCAGTGTAAAGGTTCCGGCCAAGCCATTTTAATCTCGTCTCATAGGGCAGATGCAGGGGATGCATTTAAAGTGAAGGAGTTGGAGGGATCCGGGAGGGAAAGTGGACAGGGTTTGGGGGGAGGAGTTGGGAGGAGAGGGGAATCTGATCTGGTATTGGGTGAGGGAAAAGGACTGAAGCCCCCAGGGCCAGAAGGATGAATGGAAAACAGGCAATCTCGGGAGATAGAAGATTGGGGAGACCCTCCAGAATGCACCAGAGATCAGGGAGGTGAGAGAATCTCAGGACTCAAAGGGAGATACCTTAGATGAAATGCCCAACAATAAGGAGAGGGAACTTATAGAACTGACCTCCAGCAGGAAAACAGGACATCAAGTGAGGAATGGGTTTCCATCCTACAGGCACAACTCTGACCCATAATTGTTCTGTCTGAAAGAATTACAGGGATGGAAATAGAGAGGAACTTGAGGAAAAGAAGGTCCAGTGACAGGCCCAAAGTGGGATTCAGCTCAAGGGGAGGCCCCAAGGCCTGACACTATTACTGAGGCTATGGGGTGCTCACAAAAAGAAGCCTAGCATGACTGCCCTCCAAAACACCCAACAAGCAGCTGAAAGAGTCAGATGCAGATATTTGCACCCAACCAATGGACAGAAGCAGCTGACCCCTGTTGTTGAATTAGGGAAGACTGATATAAGCTGAGGAGAAGGATGATCCTGTAGGAGGACCAGCATTCTCAATTAACCTGGACTCCCGAGATCTCTCAGATACTGGAACACCAACCAGGCAGCATACACCATCTGATATGAGGCCCCCAATGTGGGGTATTGGGCTATGCAAAGATAGACTGGTCTCCAGTAGAACTGAGGTCTGAACCCTGGGACCTGGTGGTGATAATTCACCTACATGGGACGGAAGGAGTTCTCTCATGTCTCCTGGAACCCTGGCCACTATCGAAGTTACTGTCCCCTTGGCCCCCACAGGAGAAGCATAGTTAGTAGTCATACAGGCAATGTCTCAAGCTTCTGACCTTCAGGCTAGACTCCTCCCCAGTTACCTAGCAACAGAAAAGCCAAGCCATAAGAAAGGCTGTTTGGCCCCTCCTCACTCTCTCATTCCTCTTGCTCTCTTGCTCTTACTCCCCTTTCTCTCTTCTCTCCTCTACTCTCCTCTCTCTCTCCTCTCTCTCTTTCCTCCTCTTCTCCTCTTGGCCTTGGACTGTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTTACCTTTTCTCTTCCCCCCTGCCTTTCTACAACAAATCTCTAAAACCATAGACTGTCTCTGTTCATCAAGGCCCGCTGCACTTACTCTCACCTGTGTCGGAACCTCTCTCACTCAGCCCTCTCTCCCATTACCCCAGGGCACAGGGTGTCGCCCCGGGGCCCCTTGATTTCAGGGGCTGCCCCTTGCCCACCCTCCATTGAGTGGCTTAGATGCCCACCCAGGGCCAAGTGGAAAGCGTCTGGCAGACCTCCTGTGTCTGCCTGCCCAGAGCACAGGAGGAACTCTGGCCCGATGTGGGCTATCCATCCTCTCTCCCCTTTTCCCTGCCCCCTTTTAGTTCTCACACCCCAACACACATACAGTAGAGGGCTTCCAGGTCTGTGTGCATTCAGAGATGATACACCTAACCGAGGCCCCAGGGAGTTTAGAGGTCAGGTGGGGTGGTGGGTGTGGACATCTACGTGGAGACAGAGTAGGGTGAGGAGAAGGTGTGGAATGTGAAATAGTCAGAAGGTGGATAAAATATCGAGTGTAAAAGAATAAATTAACTAATAAAAATAAAGTAAGGAGTCATAGATATAAGCAGGCATTTATGAAAAACTTTGAGTGTAAAAGTATTTTATTGCTGTTTATTTTCCCATAAGCACAAATAGAACAGAGTATCTGAGTTGCTTTAATACTTCCCCTTCAGCTATTAGAGCAATGAAGTGAATGTGTCTCTAGAAGACTGATGTCAACTTGAAAGGTCAAAGGGTAGTTGTATGAATTGTTAGTAATATTGAGATGTAAAACTTACAGTAAATATTTAATGAATGAAGTGTGCCTCCTAAACCAGACATTAAACAGACAACATTTATGTCCAAGGTTGTGTGCATCACTGTTTAAAAATCCTTGTAGTCAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAAAAAAAATGGGAATGGGTGGTTAGGGAAGTGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTAATAAAAAATATTTAAAAAAAAATCCTTGTAGTCATTCAGTATTTGACTCACCCAACATTTACGAATCAAACTTACCTGTCTACCTTTAATAACAGTTCAGAACCTTCTGTAAGGAGGGAAACCTCTGTGTTGCTTTTATTTTTCAG
Seq C2 exon
GAAAGCGAATGTGCGTGGGAGAGGCCCTGGCTCGCACGGAGCTGTTTTTGATTCTGACCACCATTTTACAGAATTTTAACCTGAAATCTTTGGTTGATACAAAGGACATTGACACTACTCCAGTGGCCAATACTTTTGGCCGTGTACCACCTTCATACCAGCTGTACTTCATTCCTCGTTAAAGCAGAACACACTGGCTGTTGCTATGCTGGTATCTCTGACTTCTCAGGGAGCAGTCTCCATATCCTGTCAACTATTAGGGACATCTCTCTCACTACTCCTCTCACATCTTTTCATTCTCCCACAATCCAGTCATCATCCATCTTTGTTTAAGAAGATTTTCCAGAGTTACCATGCAGATCCATCCTCTGTCCTCTTCAGTCTACAACACTTATATCGACAGTACTAAGACATGTACTGTGTCACTAATATGTTAAAAGTGTAATACAGACGAGGTCAACTGAGAGCCATCTATGCTTTGCTTGACTCAAAGTAAAAGGAGTTATTAACTGAAGAGTCATTTTTCAGGTTTCTTTTTTAACACATAATTCGTATAAAGAGTGAAAAAGTAAGGTTAGTATTGAAATGCATAATATGATATCATCTTTTACCTATTTGAATGTGGATTTGTAAATTAAAATGAAACTGAAAATAAAAGAATTGGTAATAAGTAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025002:ENSMUST00000025966:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types