RnoINT0044325 @ rn6
Intron Retention
Gene
ENSRNOG00000013241 | Cyp2c24
Description
cytochrome P450, family 2, subfamily c, polypeptide 24 [Source:RGD Symbol;Acc:1563697]
Coordinates
chr1:258136557-258139176:+
Coord C1 exon
chr1:258136557-258136698
Coord A exon
chr1:258136699-258138505
Coord C2 exon
chr1:258138506-258139176
Length
1807 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTGTTGCTTTTGTTTTTCAGGAA
3' ss Score
11.81
Exon sequences
Seq C1 exon
GGCACGGACTTAGTAACATCACTGACTTCTGTGCTACATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCAGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAACAG
Seq A exon
GTAAATGAAGTTTGTTTCTATTTTTACTTCAGGTACAACGTAAACTATTTTTGGGCACTGTTGTCTAGGCTGACCCTGGACTCAATATTCTTGCCCCATCTGTCTGAGTATTTGAAATCACAAACATGTGCCACTAGGCCCGATTCTAGAAGATACAATTCTGAGATTAAAATGGATTGTTTACCATGTCCTCAGGGACAGGTGGTTTTGCTCTTTGTGCCACCTCAGGAGCAATTCTTCCAATGCTCATACATGTTCCTTGATTTTGACGCATTCTCATTGTTCCTCCACATTACTAGGGTTTCGAGAATATCCAGCCTATTTTTTGACTTCAGAAAACTAAAATATAGGCCATTTGAATTTTGCTTCTGCATATACCTCTATCTTTCCTAAGTGCTCCTCTTGGAAGTGACCCTCATTTAGACTTTTCTCAGCTGTAAGAAAAAATATCTCAATCCATTCTTAGACAGCTCTGGGATCCCAAGTGATTTAAAGAATATAATAGAGACTAGGCTCTGAAGAGTCTTAATTCTGAGTTAGGGGAGCTGGTGAGTCAACAGGACACTGTAATCCAATTGGAGTAGTGCTGTGAGAGAGGCAAGATTGGGTTTCTGGGGAGGTCAAAGAGACGTTACTCACCTCCTGCTCTTTCAGACTCATAGGACTTCTCTGACAGGGCAGAGAAATAAGACAAGAAGAGGAGCCAGGAAACTGTACTGAGGAACAAAATATAGGAGCAGACATTTTTTGCTGTCAGAACTTGACAAGAGTGAAGGCTGAGAAAGACCTTGGTCATGTGGAAAGGAACTCTGCAGTGATCCCAGAGCCTCTAGAGTTTCCTTTAGTTATGAACACCCACCTTGGATGTTCAGTCTCACTGCTTCACTCTGTGTGCTGAGTCTCTACACACAGAGTCACATTCATTTTTGCCATGTGCTTTTATGACTTTGATGGGGGTCTACATTGTACCTTCTCATATGTGACAGACTGATCCCTTCTTTATTTGGGGAGGGAGGCAAAAGATGATGCAGCACAATGTTTAAGTGGCCTATGTTTCTGTGGAAGCAGAGATAGTGAGGAAGCCTGGGGGTCAAGGTCTCCTATCTGAGGAGATTATGAAGGATCAAAAAGAAATGGTACAGGTTGTAGTCTTTGAGGAAAGTGTAAGAACAGCATTTCTGAGAAAATTGGTGAGATATGAAGCTTTATAGCACTGAGAAATGGGGAATGGAGCTGAGTGGAGCTGAGGAGGGTTGAGCCTGGCACTGAGTATCAAACAGAAAATAAAATGTAAAGGTCCAGGCCACTGCCATTTCAATCTTCCCTCACAGGGCAGATGCAGGGGATGCATTTAAAGTGAAGGAATCAATGATAATAGACAGGTAATTATGTAAAACTCTGAGTGTAAAGGTATATTGTGGCTGTTTATTTTTCATAAGCACAAATGGAATATAGTTTTTGAGTTGCCCTAATACTTCCCCTTCAGCTACAAGCACAGTGAAGTGAATGTGTTTCTAGAAGATTGATGTCAACTTGAAAGGTCGAAGGGTAGTTGTATGAATTGTTAGTAAAGTTGTGATATAAGACTTATAGTAAATATTTAATGAATGAAGGGTGCCTCTTAAAGCAGACATTAAACAGACAACATTTGTGTCCAAGGTTGTATGCATCTCTGTTTAAAAACCCTGGTAGTCATCCAGTATTTGACTCATCCACCATTTAGTATTCAAACTTCACTATCCACCTTTATAACAGTTTGGAACCTAGTGTAAGAAGGTGAAACCTCTGTGTTGCTTTTGTTTTTCAG
Seq C2 exon
GAAAGCGAATGTGCGTGGGAGAGGCCCTGGCTCGCATGGAGCTGTTTTTGCTTCTGACCACCATTGTACAGAATTTTAACCTGAAATCTTTTGTTGATACAAAGGACATTGACACTACTCCAATGGCTAATACCTTTGGCCGTGTACCACCTTCATACCAGCTGTGCTTCATTCCTCGTTAAAGCAGAGCACACTGGGCTGTTGCTATGCTGGTGTCTGTGACTAATCAGGGGCAATCCAGTTTCCACTGTTAGGAACATCTCTCTCAATTCTCCTCTCACATCTCTTCATTCTCTCACAATACAGTTATCATCCATCTTTGTTTAAGAGGTTTTCCCAGAGTTATCACGCAAATCTATCCTTTGTCTCCCACAGTCTATAACACTTATATTGACTGTGAACTGTACTAAGACATGTGCTGGGTTACTAATATGTTATGGGTGTAATACAGAATAGTTCAACTGAGAGCCATATCTTCTTTGCTTGATTCAAAATAAAAGGAGTTATTAACTGAAGAGTCATTTTTCAGGCTTTTTCTTTTACACATAATACATATAAGGAGTGAAAAAGTAAGGTTAGTGTTATAATGCATAATGGGATATCATCTTTTACCTATTAGGATGGGGATTTGGAAATTAAAATGAAACTGAAAATAAAAGAATTGGTAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013241:ENSRNOT00000054729:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCACTGACTTCTGTGCTACA
R:
AGACACCAGCATAGCAACAGC
Band lengths:
345-2152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]