BtaINT0046175 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037559 | CYP2C18
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 18 (CYP2C18), mRNA. [Source:RefSeq mRNA;Acc:NM_001076051]
Coordinates
chr26:15970927-15973325:+
Coord C1 exon
chr26:15970927-15971068
Coord A exon
chr26:15971069-15972787
Coord C2 exon
chr26:15972788-15973325
Length
1719 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ACCTCTGTGTGTATTTTCAGGAA
3' ss Score
11.38
Exon sequences
Seq C1 exon
GGCACGACTGTAGTAACATCACTGAGTTCTGTGCTACATGATGAGAAAGAATTCCCCAACCCAAAGGTATTTGACCCTGCCCACTTTCTGGATGAGAGTGGCAACTTTAAGAAGAGTGACTACTTCATGGCTTTCTCAGCAG
Seq A exon
GTAATAAAAGTTAATTTCCTTAAGTACTTAGGGAACAAGGTACCTTTCTGGAGTTGGTTGGAACTTAATGATGCCCTCTCTGGGGCTGGTAGAAATGCTTTTTGTCCATGATCACAAGCGCCACTTTTAATGCCCTTGTGTTTCCTCCCCTCACCACACATCCCCAATATTGGAACTTCAGGGAGGTGACCCAGTTCTTCCAAAGTAAGAAAGCTAGAAAACAAGTTAATTGAATTATGCCTCTAGCATAATTCAGTAATAATCTTAGGTAGCACTGAGTTACCTGTGAGCTCCTCTTAGCAGGTGAAACTTTTAGACTTTCCTTGCCTGCCATGATTCCATAAGTTTGAGTATTTTCCATGTGATATCCTTCACTCCCTAGGCTGAGTTCTGGGGTTAAAAGTACAGAATGGGCACCAAAGTGGGCTCACAATCTAGTTAGGGAAGCAAATTACTAAAGAGAACATTGAATAGTGTTGTGAGAGAGGAAAGCACAGGCTGTTCATGAGACCAGAAGGAGAAACCCTGTTTTCTGGTCACTCATACACCATAGTGAGGCATAAAATGGAGTAAGGAACATTCTTACAGAAAAAAGCGAATTTGAACTGCCTCACAGGAACAAAGTGAGAAGAGAAGGCAGGGCAATTTTACAGGAGCAGGACATTCTTTTAGATTGAGAAAGTCAGAACCTGCCGACTAACTGCAGTGTCAGCGAGTTCTTGGAAATGTGGCAGGATACCCTGCAGTGGTTCCAGAGCACTGTGGTCATCTTCCACTGCTGATCACAGATCTTGAAACTGGGTCTCCACAACTACAGTGTGCGCTGAGTCTCTGGCCACAGCCTCACCTCCTTGTATTTGGCAGCTTTTGATGCCTGCTTTGTGTCTTGCTCTGTATATACCAAGATGTTAAGGACTGAGCCTTCCCTTCAAAATCACACATTTTAGCATAGCAGAAGAACCAGAATTATGATCAAGGTGATTCATGCTTCAACTGAAACAATGAATGTGATATTGAGGAAACTCAGAGAGGGCAAGATTCTACTGTCTGTGAATATTGCAAAGACCATAAAGAGGAAATGACATGGGACGTAGGTCCTGAAGGAAGTGTCAAAGAAATGCATCTTGACAGAATGAAGCATCATGAGACAAAACTAGAGGTTTCATGGTGTATTGGAGGTTGATGAAGAGCGGATATGGCTAGAGCTGAGAGTAGAGAGTGTGAAGAATGGAAAGAATGATATCGAACATCATACTGGGAACAAAATATGAAGGGCCAGCTCAACTCATTTGGACCTCGTAACAGATGGGAGAGACATTTAATGTTATCAAGTGGGAGACTGACACATTTAGACATGTACTTTTGAAAGCACATGGAGGAAAAACATCTTTAGCTGAATTTTGTGCCAGAAGTAGAAAGGAAGCACATATATACAAGTTCCCTCCTCTCAGGGCTTCCGATAGAAACTGGAAGTGGAAAAGAGCAGTTAAAATGTGGGAATACACGATGAAGTGCTTGACACAAAGTTGACGTTCAATCAATATTTACTGAATGAAAAATTCTCATGAAGATATTAGCTGAATAGCAACTGTGTCTCTCTTTCTGTTTATCTGTCTCTAAACATCTTTCCAGGCCTCTATCTGTTCAATCATTCATATATTTTGTGACAATTCAAAATGTAATGCTCAAGGAACAAATCACCTCTGTGTGTATTTTCAG
Seq C2 exon
GAAAACGAAGTTGTGTGGGAGAAGGCCTGGCCCGCATGGAGCTGTTTTTATTTTTGACCACCATTTTACAGAAATTTACCCTGAAATCTGTGGTTGACCCAAAGGACCTCGACACCACCCCAGTTTCTAGTGGGTTTGGCCATGTGCCGCCCCCATACCAGCTCTGCTTCACTCCTCTGTGATGAAGGGCAGTCCATTGGCTGCTGCTATGCTGTTGTCTGTAATTAACTCTCATCTGGGCCATCACTCACCTCCTTCTTACTACCAGGGATACTCTTTCTGACCGCCCATCTCATACTGCCACAATTTTCTCAGTATCCAGTGAATATCCAACTTTCATGAAAGGAAAGTCTCCTGAGTTTTACTGCACAAATATTTGCTGTCCTCATGTTCTGTAACACTTATATTGACTACCACATATGCTAATACTTCTTAGTATCATGTTATCACTGTAAAACAGAGTGGAATTGTTGGTATAAGCCAACACACAGCCATTTGCTCTCCAGGTGTTCTAAATAAAAAGCAGCAGTATTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037559:ENSBTAT00000040300:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCACTTTCTGGATGAG
R:
GGCGGTCAGAAAGAGTATCCC
Band lengths:
355-2074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]