HsaINT0044251 @ hg38
Intron Retention
Gene
ENSG00000108242 | CYP2C18
Description
cytochrome P450 family 2 subfamily C member 18 [Source:HGNC Symbol;Acc:HGNC:2620]
Coordinates
chr10:94733297-94736190:+
Coord C1 exon
chr10:94733297-94733438
Coord A exon
chr10:94733439-94735262
Coord C2 exon
chr10:94735263-94736190
Length
1824 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CCTATGTCTCTTATTTTCAGGAA
3' ss Score
10.46
Exon sequences
Seq C1 exon
GGCACGACCATAATAACATCCCTGACTTCTGTGCTGCACAATGACAAAGAATTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTGGATAAGAGTGGCAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG
Seq A exon
GTAATAGATATTCATTTCCATCTGTCCTTCAGGGCACATGATACCTTTTTGGGATCAGTTGACTCTTACATGATGCCACCTCTGAGGTTTGGCTGAATTGCTTTGCAGATCATTAGCACCATTCCCTATGCCCATGCGATTTCCCTGCTGATGAACATCCCCATTATTGGGCCAGGTTAGTGGGGCTTTGGGGAGTTGATCCAGTTTTTCAAACTGAAAAAGCTAGAATGTAGGTTAATTTAATTCTGCCTCTAGATACATCACTGAGCTACCCAAGAGCTCTTCTTAATGGGTGAAACTTATTTAGACATTTCTCATCTGCCATGAGAAAAGTATCTAATTCCACAACTTTGAATATCTTCCCTGTGGTGTCCCTAGCTCCCTAGACTGAGCTCTGGAGATACAAGTATCTGAGAGCAGAGAATGGGCTCTTAAGAGGCTCACTCCTGATTTAGAGAAGTAGACAAGTAAACAGATCATTGTAATCTAGTAGGAGGAAGGCTGCCAGAGGGGAAAGCGCAGGATGTTGGGGAGCTCAGTGGGGGAATCTGCCTGCTTCCTGCTCATTCATAGGCCATACCACTTCCAAGAGGAAGGAAACTTAAGCTGCCTCATTGCAGCAGGAAACAGGACAAGAAGAGAAGGCAAGGCACTTTTACAGAGGTAATGGACCATAGTAGCAGGACATTTTCTGTAGATCTAGGGGGTCAGAACCTACCAACAAATTTCAGGGTCAGGAAAACCCTGGGAATGTGGAAGGATAGTCTGCAATAATTCCAGAGCACCTTGATCTCCCTCCACTCATGATCATACATCTTGGATATTCAATCTCTACAGCTAAAGTGTGTGGTGAGTCTGTGGACATAGAGTTCCCTTCATTTTTTCCTCTGGCTTTTGATCCCTGCTTTGGATCTGGCACTGTATACACTGAGATGTCAAGAACTAAGGCCTTCTTTTAAGGATTTCACGTTTTAGCAAGATAGAAAAGTAAATACACAGATAATAGAATTCCCGGTGATCTATGCTCCAGTGGAAGCATGAATATGATGAGGAAACCTAGAGAGGGTGAGTTTCTATTGACTAGGGATCACAGAAATCATAAAGAGGAAATGACATGGGGCATAGCTTCTGAAGGAAGCATAGGAGTAGAGCTTTTTAGGCAGATGTGACAGCAAGAGATAAAGCTTGAAACTTTGTGGTGTGTTGGAAATTGATGAAGAATGGATATGCCTAGAGCTGAGAGTGGAGGAGATGAAGAATGGAAGGAGTGATATAGAACATCAGACTGGGAACAGAATGTGAAGAGTCAGGTCAAGCCATTTGGCCTTTATCCCATAGGACAGATGGGTGTTGTTTAAAGTTGTAAAATGAGAGACTGACATGTTTAGACATGTACTTTTGAAAGTACACTAGGAAAAAAAATCTTTGGCTAAACATTGTGCCAGAAGTACAAAGGGGAACACACTATATGAGCCTTCTCTTTTCAGCCCATCTTCCCTGTGAATGCATTTCTAGAAAAAGACTGATGGAAACTTGTAGTGTCAAAAGAGCAGTTATAACGTGGGAACACTTAGTGAAGTGCATGGCATAGAGCTGATACTCCATAAATATTTGTTGAGTGAAGGGTGCCTAGTAAAATAAGATATTAAGTAGATAGGAAGTGTATTCATTTTTGTTTTTCTGTGTATCCAGCCATCCTTCCAGTCATTCTGCCTTCGATCCATCCATCTATTTAATCATTTATCAAATAGTTACTGCATACTCTTTGTGACTGTTCATGACCTAATGTTCAAGGAACAAATCCCCTATGTCTCTTATTTTCAG
Seq C2 exon
GAAAACGGATGTGTATGGGAGAGGGCCTGGCCCGCATGGAGCTGTTTTTATTCCTGACCACCATTTTGCAGAACTTTAACCTGAAATCTCAGGTTGACCCAAAGGATATTGACATCACCCCCATTGCCAATGCATTTGGTCGTGTGCCACCCTTGTACCAGCTCTGCTTCATTCCTGTCTGAAGAAGGGCAGATAGTTTGGCTGCTCCTGTGCTGTCACCTGCAATTCTCCCTTATCAGGGCCATTGGCCTCTCCCTTCTCTCTGTGAGGGATATTTTCTCTGACTTGTCAATCCACATCTTCCCATTCCCTCAAGATCCAATGAACATCCAACCTCCATTAAAGAGAGTTTCTTGGGTCACTTCCTAAATATATCTGCTATTCTCCATACTCTGTATCACTTGTATTGACCACCACATATGCTAATACCTATCTACTGCTGAGTTGTCAGTATGTTATCACTAGAAAACAAAGAAAAATGATTAATAAATGACAATTCAGAGCCATTTATTCTCTGCATGCTCTAGATAAAAATGATTATTATTTACTGGGTCAGTTCTTAGATTTCTTTCTTTTGAGTAAAATGAAAGTAAGAAATGAAAGAAAATAGAATGTGAAGAGGCTGTGCTGGCCCTCATAGTGTTAAGCACAAAAAGGGAGAAAGGTAAGAGGGTAGGAAAGCTGTTTTAGCTAAATGCCACCTAGAGTTATTGGAGGTCTGAATTTGGAAAAAAAAACTATGTCCAGGAGCAGCTGTAACCTGTAGGGAAATACTGGAACAATCATCCATAAGAGGGATGAACATTAAGTGTTTGAATTCATGCTCTGCTTTTGTGTTACTGTAAACACAAGATCAAGATTTGGATAATCTTTTTCCTTTGTGTTTCCAACTTAGATCATGTCTAAATATATGCTTTCATATGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108242:ENST00000285979:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATGTTTGACCCTGGCC
R:
CAGAGAGAAGGGAGAGGCCAA
Band lengths:
346-2170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development