HsaINT0044251 @ hg19
Intron Retention
Gene
ENSG00000108242 | CYP2C18
Description
cytochrome P450, family 2, subfamily C, polypeptide 18 [Source:HGNC Symbol;Acc:2620]
Coordinates
chr10:96493054-96495947:+
Coord C1 exon
chr10:96493054-96493195
Coord A exon
chr10:96493196-96495019
Coord C2 exon
chr10:96495020-96495947
Length
1824 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CCTATGTCTCTTATTTTCAGGAA
3' ss Score
10.46
Exon sequences
Seq C1 exon
GGCACGACCATAATAACATCCCTGACTTCTGTGCTGCACAATGACAAAGAATTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTGGATAAGAGTGGCAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG
Seq A exon
GTAATAGATATTCATTTCCATCTGTCCTTCAGGGCACATGATACCTTTTTGGGATCAGTTGACTCTTACATGATGCCACCTCTGAGGTTTGGCTGAATTGCTTTGCAGATCATTAGCACCATTCCCTATGCCCATGCGATTTCCCTGCTGATGAACATCCCCATTATTGGGCCAGGTTAGTGGGGCTTTGGGGAGTTGATCCAGTTTTTCAAACTGAAAAAGCTAGAATGTAGGTTAATTTAATTCTGCCTCTAGATACATCACTGAGCTACCCAAGAGCTCTTCTTAATGGGTGAAACTTATTTAGACATTTCTCATCTGCCATGAGAAAAGTATCTAATTCCACAACTTTGAATATCTTCCCTGTGGTGTCCCTAGCTCCCTAGACTGAGCTCTGGAGATACAAGTATCTGAGAGCAGAGAATGGGCTCTTAAGAGGCTCACTCCTGATTTAGAGAAGTAGACAAGTAAACAGATCATTGTAATCTAGTAGGAGGAAGGCTGCCAGAGGGGAAAGCGCAGGATGTTGGGGAGCTCAGTGGGGGAATCTGCCTGCTTCCTGCTCATTCATAGGCCATACCACTTCCAAGAGGAAGGAAACTTAAGCTGCCTCATTGCAGCAGGAAACAGGACAAGAAGAGAAGGCAAGGCACTTTTACAGAGGTAATGGACCATAGTAGCAGGACATTTTCTGTAGATCTAGGGGGTCAGAACCTACCAACAAATTTCAGGGTCAGGAAAACCCTGGGAATGTGGAAGGATAGTCTGCAATAATTCCAGAGCACCTTGATCTCCCTCCACTCATGATCATACATCTTGGATATTCAATCTCTACAGCTAAAGTGTGTGGTGAGTCTGTGGACATAGAGTTCCCTTCATTTTTTCCTCTGGCTTTTGATCCCTGCTTTGGATCTGGCACTGTATACACTGAGATGTCAAGAACTAAGGCCTTCTTTTAAGGATTTCACGTTTTAGCAAGATAGAAAAGTAAATACACAGATAATAGAATTCCCGGTGATCTATGCTCCAGTGGAAGCATGAATATGATGAGGAAACCTAGAGAGGGTGAGTTTCTATTGACTAGGGATCACAGAAATCATAAAGAGGAAATGACATGGGGCATAGCTTCTGAAGGAAGCATAGGAGTAGAGCTTTTTAGGCAGATGTGACAGCAAGAGATAAAGCTTGAAACTTTGTGGTGTGTTGGAAATTGATGAAGAATGGATATGCCTAGAGCTGAGAGTGGAGGAGATGAAGAATGGAAGGAGTGATATAGAACATCAGACTGGGAACAGAATGTGAAGAGTCAGGTCAAGCCATTTGGCCTTTATCCCATAGGACAGATGGGTGTTGTTTAAAGTTGTAAAATGAGAGACTGACATGTTTAGACATGTACTTTTGAAAGTACACTAGGAAAAAAAATCTTTGGCTAAACATTGTGCCAGAAGTACAAAGGGGAACACACTATATGAGCCTTCTCTTTTCAGCCCATCTTCCCTGTGAATGCATTTCTAGAAAAAGACTGATGGAAACTTGTAGTGTCAAAAGAGCAGTTATAACGTGGGAACACTTAGTGAAGTGCATGGCATAGAGCTGATACTCCATAAATATTTGTTGAGTGAAGGGTGCCTAGTAAAATAAGATATTAAGTAGATAGGAAGTGTATTCATTTTTGTTTTTCTGTGTATCCAGCCATCCTTCCAGTCATTCTGCCTTCGATCCATCCATCTATTTAATCATTTATCAAATAGTTACTGCATACTCTTTGTGACTGTTCATGACCTAATGTTCAAGGAACAAATCCCCTATGTCTCTTATTTTCAG
Seq C2 exon
GAAAACGGATGTGTATGGGAGAGGGCCTGGCCCGCATGGAGCTGTTTTTATTCCTGACCACCATTTTGCAGAACTTTAACCTGAAATCTCAGGTTGACCCAAAGGATATTGACATCACCCCCATTGCCAATGCATTTGGTCGTGTGCCACCCTTGTACCAGCTCTGCTTCATTCCTGTCTGAAGAAGGGCAGATAGTTTGGCTGCTCCTGTGCTGTCACCTGCAATTCTCCCTTATCAGGGCCATTGGCCTCTCCCTTCTCTCTGTGAGGGATATTTTCTCTGACTTGTCAATCCACATCTTCCCATTCCCTCAAGATCCAATGAACATCCAACCTCCATTAAAGAGAGTTTCTTGGGTCACTTCCTAAATATATCTGCTATTCTCCATACTCTGTATCACTTGTATTGACCACCACATATGCTAATACCTATCTACTGCTGAGTTGTCAGTATGTTATCACTAGAAAACAAAGAAAAATGATTAATAAATGACAATTCAGAGCCATTTATTCTCTGCATGCTCTAGATAAAAATGATTATTATTTACTGGGTCAGTTCTTAGATTTCTTTCTTTTGAGTAAAATGAAAGTAAGAAATGAAAGAAAATAGAATGTGAAGAGGCTGTGCTGGCCCTCATAGTGTTAAGCACAAAAAGGGAGAAAGGTAAGAGGGTAGGAAAGCTGTTTTAGCTAAATGCCACCTAGAGTTATTGGAGGTCTGAATTTGGAAAAAAAAACTATGTCCAGGAGCAGCTGTAACCTGTAGGGAAATACTGGAACAATCATCCATAAGAGGGATGAACATTAAGTGTTTGAATTCATGCTCTGCTTTTGTGTTACTGTAAACACAAGATCAAGATTTGGATAATCTTTTTCCTTTGTGTTTCCAACTTAGATCATGTCTAAATATATGCTTTCATATGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108242-CYP2C18:NM_000772:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATGTTTGACCCTGGCC
R:
CAGAGAGAAGGGAGAGGCCAA
Band lengths:
346-2170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)