DreINT0054260 @ danRer10
Intron Retention
Gene
ENSDARG00000042953 | cyp2n13
Description
cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
Coordinates
chr20:25616169-25617174:-
Coord C1 exon
chr20:25617033-25617174
Coord A exon
chr20:25616530-25617032
Coord C2 exon
chr20:25616169-25616529
Length
503 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCTGTGTCTCTCTTTCACAGGAA
3' ss Score
12.89
Exon sequences
Seq C1 exon
GGCACAACCGTTTTACCTATACTGCACTCTGTTCTCTTTGATGAAAACGAATGGGAGACACCCTACAAGTTCAATCCTGGCCACTTTTTAGACAAAGAGGGCAAGTTTGTAAGGCGAGATGCATTTATGCCCTTTTCTGCAG
Seq A exon
GTAATAAGAGAGCAAAAACACTTTACTGTGATTGTTTAAAGATTTGGGTTCAGTATGGTAAAATAAAAAAGTAATTAATACTTTTATTGAGCAATGATTTATTAAAATGATCAAGAGTTTAATATTGTCACAAAATTAATATTCTCAAATGTTCTATTCATGTTAGAATCTCAACTGAACTTTCTGAAAATTGAAATGATCAAAAATGTTTCTTGAACACCAGATCAACACTTTAAAAATGACATGGAAATCCTTTATAAAATATATCAAAATAGAATGTTTTTTTAATGTTTTTGATTGACAAAATACAGCCTTGTTTTGCATAGCACTTAATAAATAATTAAATTAATAAATTATAATAATGATTTTTATATAATAATAATAATAAAACAAAAACCTTACTTGCCCCAAATTTCTTCAGTATTCTACATCAGAGACAAACTGAAAATGATTATAGACTTGTTTGCATTAACATCTGCTTGCTCTGTGTCTCTCTTTCACAG
Seq C2 exon
GAAAGAGGGTCTGTTTGGGGGAGCAGATCGCCAGAATTGAACTCTTCCTATTTTTTGTCAGTTTGTTCCGCAAATTCAGATTTTCAGCCACAGAGGGAGAGAAACTCAACATGGATGGAGTGATTGGAATAACACGCACTCCACACCCGTTCAAGATCTGTGCAACAGCACGTTGAGACAAATCTGACTATTTTTATTAGGAATTAATGAACAATATTTATAGTCAATTACAGTACATTATATGTATCTAACATGACACTACTGGCAATTTTTATTTCACATTTTGGGCTTTTTGACTTCATAAATTGTTTTTCTTTTCCTGGCTTTATTGAAAATAAACACCTAAAAAAGTGTTTCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042953:ENSDART00000063058:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(11.8=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAAGTTTGTAAGGCGAG
R:
TGAAGTCAAAAAGCCCAAAATGTGA
Band lengths:
346-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]