GgaINT0039184 @ galGal4
Intron Retention
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25609984-25612083:-
Coord C1 exon
chr8:25611945-25612083
Coord A exon
chr8:25611346-25611944
Coord C2 exon
chr8:25609984-25611345
Length
599 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTCCTTGCTCCTCTTCCAGGCA
3' ss Score
11.29
Exon sequences
Seq C1 exon
GGTACCACGCTGATGACCAGCCTGACTTCAATAATGTTTGACAAAAATGTGTGGGAGACTCCAGACACCTTTAATCCTGAACACTTCCTGGAGAACGGCCAGTACAGGAGGCGGGAGGCTTTCCTGCCCTTCTCTGCAG
Seq A exon
GTAGGAAGATGGATGGGGAGATGGTTTTGCTTTTTGTAATGCTTTTTCTTCACCCCCCCCATTGGAGTGGGGGAGAACTGTTCCCAGTCTGATAGCAGCCCGTGCCTGGCACTTCCCGCAGTGAAAATCCCCTAGCAGTTAATACTGACTGCTGTGGGCAGGAGGGAAATCAATTTGTTATTGCAGGATGAAAAATAAGGCTTTTTCCTCCTGTGTGAGCTGTGTAAATGGGTGCTTTTTATTTTTGAGCCCCCCCCCCCCCCCTTTGCTGCTCTGAACGGTTGCATCTCTCTGCTGAGCTGGGAACTTCTGGGGACGCCTTCTGCACGATGTGTGGGTGAACATTGCCACCTAACCTTGCTAGGAAGAAAAGCTCCTGCTGCCTTTGCAATGCAGCATGGGTGAGAGGAGCCTTGATGCTGCAGAGACCCCAAGCCAGTGCCCTTCATCTGCAAGCATTGTCCTTCTCTGTGTCCCATGGCACCAGCAAGCCCACCTATCCCCTTGCACAACACCCTCCCCACTGTAAGAATAGCAATTCAGGGTGATGCTTAAACTCTGCTCTGGACTGAGCATGATTTTCCTTGCTCCTCTTCCAG
Seq C2 exon
GCAAGCGTGCCTGTCCTGGTGAGCAGCTGGCCAGGACTGAGCTCTTCATCTTCTTCACTGCCCTGCTGCAGAAGTTCACCTTCCAGGCTCCATCTGCCACCGTGCTGAGCTTTGCCTTCACGCTCAGCCTCACGCGCTGCCCCAAGCCCTTCCAGCTCTGCGCCCTGCCTCGCTGCTGAAGGCAAGATGGAAAGCATTCCCTTCTCAGCTGTCCTATTAGGTTACAGGCTGCAGTGCTGGGGCTCCTCACAGCCAGCAGCCTGGCATGGTGTTTGGGCAGTGGGGAGGGCAGGAGGGCTGCATTCTGCACACTGCAATGAGGACAAGCCCTGGGACTCACCCTTGCTCTCCTACTCCTTTCTCTGATCAGTTTGATAAAATACATGAATTCAAAAGCCTTATTACTTCATTTCCACCCTCAGCAACTCTAAGGAAGTGTCTGCCGACTGTAAGTCATGGGCACACTTGTTCTTGCTGTGTCTCTTCTACAGTGGATGCATTCATCACTCAGAGACCATCTTGCAATCCCTAAATCTCTATGCTGCTGCACAGTAAATGGCCATGGGCTGCACGTTTGGAGGTCTTCCTGCTCTAGGGGTGGCTGTCTTTGCACATACAAGGCCTGGGCTTATACCCATCGCTTTAATGGACATCTAGCTGCCAGTGCAGATTCTGACCTTGGGGTTGGTGCAGTGCATGTTCCACACAAAGTACTGTTGCTGCTTTGCAATGGGAAGTCAATGCCTAAGCTGACATACTTGCAGAAGAAATATAAGCTTTTTTTTTTTCTTCCACATGCATATAGAAATTTAAATAAGATGGTAGGAGCATCTTCTACCATAGGCTGACCTGTGGGTGTCCAAACTCTTTGGCTTGCCTGGGCTGCACTGAATGAAGAGGAATTCAGTGATACACCTTTGCTTCGTATGCACTTCCATCTCAGATGCCATTTTGCTGGACTGTCCATTTGCTGCCATCTGCTGCACTGCAACAAAAGTAATGGGATATTGGTGGGAAGGTCCAAATTCTTCTGCCATACAACCAGCAGCTGCCTCTGATGTGAGGGGCTGACATCATAAAGCAAGAGGCACTACTTTTGGAGCAACCCTCATAAAATATATAGTATAGTTAATGTATGGAAGTAACAAAAGTTATTTTAACTTTTAATATCTTTATTAAAACTTTTAAAAGAAAGTGAGAGAGAGCAATAAAACCCTAAAACCAGTAGGATGTGTGGTCTTGTTGTGCCACTAACGCATCAGCCTGCTTCTATGGCAGGGGGTGCAGCTTTCAAGGTGTTCACTACAGATTTTGGATGAGATTTTACTCTTCCTGTGCTTCATCCTTGAAAACAGTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413:ENSGALT00000018621:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.5=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGACCAGCCTGACTTCA
R:
GGACAGCTGAGAAGGGAATGC
Band lengths:
344-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]