BtaINT0007295 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86426801-86433714:+
Coord C1 exon
chr3:86426801-86426939
Coord A exon
chr3:86426940-86433195
Coord C2 exon
chr3:86433196-86433714
Length
6256 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
AACTTTTTATTGTCTTTCAGGAA
3' ss Score
11.23
Exon sequences
Seq C1 exon
GGTACCATGGTGCTGACCAACCTGACTGCACTGCACAGGGACCCCGCAGAGTGGGCCACCCCTGACACATTCAATCCGGAGCATTTTCTAGAGAATGGACAGTTTAAGAAAAGGGAAGCCTTTCTGCCTTTTTCAATAG
Seq A exon
GTGAGTAGCGAGAAATATGAATGTGGGAACCCAGAGTCCCTCTTGCAGCCTTTCCCTCCTCTTCTCCCTGGTGTTTTGCTTTAGTTGGCATGTCTCCAGGTTCAACAGGAAAATAAAAACTCAGCCTAAAAGTTGAGAATTTTTATTCAGGGCATTACAGAAGACTATATCCTAGGAAGGTGGCTTCTCAGATAGCTCTTGGGGACTGTTTCCAAAAGGTAGGGAAAGAACCAGGGTATGTAGGAGTTCTTGCTGGAAAAGAGAAAAAATAAACATGTAATCAAACATCATAAGATTTTGCTAGTCACACACACAAAAAAAGACCAGACATTTCAAGTTAATGATTTTAGTGTCTTTCTTTTTATAGGAAGATGCAAGAGTCTGGGCTCAGTGAAATTATTCCTTTCAGTTCAGTTCAGTTCAGTTGCTCAGTCATGTCCAACTCTTTTCGACCCCATGAATCACAGCACACCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACCCAGACTCATGTCCATCGAGTCGGTGATGCCATCCAGCCATCTCGTCCTCTGTCTTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTCCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGGACTGGAGTTTCAGCTTTAGCATCAGTCCTTTACGTGCATCCTAATACTCTAGAGCCAGTACCCTCTTTTTTTCCATCCTGAATTCCACTGAGAGCACAGCGCTGGGGGCAGCTTCAGTGACTGATGGCTTTGTGGAGGGCAGCATTCATTGTTTACCAGAATGTCAGGCAACAGTGTTCAGTCCACACCATGGAGTCCCCTCCAGAGTGACTCTCTCTCGCTGTTGGTTACACCTCAGGATTCCCTGGGTGGAGCATCACCAGGACTCATGCCTTTACTTCCTAAGCCCTTGCTTGACTCTGATGGAGATTTCAGGTTCACGTTGTGCTGGCCCCAGAATGCTGAAACAAGAGCTCAGACCCTTCCTGTCGTGCAGAGAGAAGATTGAATACTTGCCTTCCTTACAGAGTTTTAAATGTTCAAAGATCTTTTTAGGGCAATCCATTCACACAGAACTAGAGTCAGTTGCTAGGAGAGGATGGAGAAGGGGCACGGAAAGGGGCTACTTGCTTTATGGGCATCACAAGTGATGCCTGTGACTCTAAGTGCCGCAGGCTTAACTGATCGGGATTCTACTCTGTCACTGGTGCGTAAGAAGTCCTTTTACTGTTTTAAATTCTAATGACTCCTTAAATAACTAGTCAATACATTTACATGGTATACAATTTGAAAGGTATGAAAGAAGGTGCAGTGAAACCCCCCGGGTTTCTAAGCCAGCCAGTTCCAAAAGAGTATATTAATTTAAAACATTGTAAAATGAGTGAGAAAAATTTTAGTATATTTCACATATTAAATTAGGTATGTTGCAGAGATCATTTCAACTAAATTTCCAATTTCTTAATTCTGTAAGTATTTCCTGGGCATCTATTATGTATCAGACATTCAGCCCTGAGGATATGATAATGAATGAAGTAAAAAAAAAAAAAAAAAAATCTCTTAAAAATGTGTGTTCCAATTCTGTAAAGCAAGTATCCTTCAATTAAAAAAATAAATTTAATTGTCATAAAAAGTGAAAAAGCATGTGTTCTAGTGTAACCTTATTACAAAATTCTGTTCACCACCTTTAGGGATATGGAAGGAAACCCGGGCTTAGCAGGGTCGACTACTGTGCCTGCAGTCATGAAAAAGGTCACAAGACAGAGCTGGAACTCAGTGTTGACCACGTTTATCAAATACTAAAGCCTGCGTTCTTCCTAGCAGCGTCTCCCTCCAAAACAGTAACTAAGCATTACAATGGGTTGGCACTCTGGAGTTTATAGTAGTTTTCTTATCACTGATTTAAATTAAATATAGATTGATCTTCTACAACAGTATTATTTTGCTGATCATGCCACAAAGGCATAGAGAGGGAGGGACTGGAATTTGACCCCATGTAGAAGTGATGCAAAGCCCAGGCTTTCCTGATGTAGGACACTGTCCTGCGTGTATCTGAACTGATTCTGATCAGATCTTCTGTGTCTTTCTCCCTCTGGTTCTGTACCACCTTTACACTGGACAAGTCACTTCCTAACATGAAAGCAGACATGAGATGTAGAAACACCTTTCGATCTTCCTGTCTGTAAGAGCTTCATGTTTCCTATTACAAGACAGAGTTTCACATGTGTATTTTAAGTATTTTAATCATTCTTGACTCACAGTTTTTTTTTTTTTTTTGCTATTGAGAGTTATAATATGATATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTGCTCCTTCTTGCATAGTTAAAATGTAATTCACTTGCCCACTTAAAGCCTTTCCATTTTAAGATTCACCAAATTCATATCATATGTATCAAGTATTATATTGCTGCATAACAAAGATGAATAACTCAGTGACTTAAAACAATCATGGTTGTTGTTGTTCAGTATCTAAGTTATGTCTGGCTCTTTGTGACCCCATGGACTGTAGCACACCAGGCTCCTCTGTCCTCTACTATCTCCTAGAGTTTATTCACACTCATGTCCATTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGTCACCCACTTCTCCTCCTGTTCTCAGTCTTTCCCAGCATCTCCTGGAGTTTTCTCGAATTCGATCATTTGAGTCAGTGATGTTATCTAACCATCTTATCCTCTACCATGCGCCTTCTCCTTTTACCTTCAATCTTCCCCAGCATTGGGATTTTTCCAGTGAGTCAGCTCTTTGCATCAGATGTTCAAAGTATTGGAGTTTCGGCTTGAGTAACAGTCTTTCATAAATATTCAGAGTTGATTTTCTTTAGGATTGCCTGGTTTGATCTCCTTGCAGTCCAAGGGACTCACAAGGGTCTTTTCCAGCACCACAGTTCAAAAGCATCAGTTCTTCAGCGCTCAACCTTCTTTATGTTCCTACTCTTATACCTGTACATGACTATTGGGAAAACCATAGCTTTAGTGTATATTACTGCTCCCAAGTCTGCAGTTGAGCTGGGAGCTCGACTGATCTTAGCTTTGTCCTCTTGCCTGTTTGGGAGCTGAGCTGACTGAAGACTGAGGGAAGATGACCTCAGCTGAGACAGTGGGGGTCCTTTCCAAATTTCATCCTCCAGCAATCTAGCCAGCGGATGTACATGTAGAAGATAAGACCCCAGGAGGGAGAAAAGCACACAGTGCCTCCTAAGGGCCAGGCTGGGAACTGGCAACCATCACTTCCACTGCATTCTGGTGGCCACCATAGGTCACCTGTGAGCCCCAGTTCAAGAGAAAGGGAAAGTAGCACAGTTTTCATGGGAAGAGTATGAAATCATGTTGCCAATGATGTGGGTACAGGGAGATGGGGTAAATTGGAGCCATTTTTGCAAATAGTTGGTCTCACTGTCTGTCTTTTTGCTGAGGAGAATGCAATTGAGAGAAGGCAAGCAATTTGGGGATTTCCTTAGCTGTGACAGAGTGAGAACAGCTTAAAAGGTTTCAGGAGATAGAGTCGACACCACTGTCTTGTTTTCTCACCACACTGCCATCTCTGGAGCACAGTGGCTTTGCCTCATTCTTGATCTGGCACTTTGTAAAAACAGCTTCCCTGAAGGAATAGAATGTGGAGAGCTCCTTCCCTTCTCTGGAAAGGATGATCAGGTGTGGAATTAGGACACATGCATATAAGCAGGGCAGATGGCAAAGCTGTTACTACAAATTTGTATTTTCTTTTCGTCATTTAAGTTTTTCCCTTTCGATCCAACAAAGCACAGACAGCTTCATGAAAAGCAAGAGGCTGAGTCCTCGTTTTTTCAAAAAATAAAAATTTTTAATTCACTGAATCATGGGAGATAAAATTATGAAGAACTTTCCCCCAAAACCCTAGGTCATTGCTCTCATTTCACCAATGAGGTAATTGACCTGGTTAGTTACTGACAGCCAGTTAGTGGAAGCACCAAGGAGAAGGTCCACATTTCCCATAGTCCAGGATGAAGCTGTGAGATCAAGTTGCCCTCCTTCTCATGATTTTAAAAGCAAAATTCATATAATTCATATCTCCTGTCTTCCTGGTATCCTCACCCGGCCACGTAGTATAGTTGGGAGAGAGATTATCTCACGTGTTTGACAAGTGAGACATGTTCAGGTCTGTAAGAATAAAGGGTTTACTCATAGCCCAGAGCTGGGTACTGATGAAACAAGTACTGTAACCCTGGTTCCTGATTCCGTGGATCCAGTTTTGTCATATATGGATTCTTCTAGGAGAATCCTGGGTATTTACAATATATCTGATCTGATACTATTTTAACAAAATTCCTCATTGTACTATTTGTGATGGGTGAAGAGATAAGGGGGTTTCCCAAGTGGTTCAGTGGTAAAGAATCCACCTGCCAAAGCAGGAGATGCAAGAGATGCGGGTTCCATGCCTGGGTCAGGAAGATCCCCGGAGTAGGAAATGGCAACCCACTTAGTGTTCTTGCCTGGAAAACTGGGCACGACTGAGCACACACATACACACACACACAGATAAGGATGAGGGGAACAGAGAAAATTAGATACACGCTGGTGGGAAACAAGCACAAAACAATTTAAGAATGATATGATTCTAAAGCATATTTTAATTTATTCAACACTTTTGCAGATATTCTCTAATTTCATTTCCTCAACAGCTCATTATAGGCAAGGACGAAATAGAGGCATGCTACATTAACTATTTGTAAGAAAGTTTCATTACAGGGGGAAATACCAAGTAACAGAAGCAACGCCCAGAATTGCTTACAGACAGTAATCCCAGTGACGGTGTGCAGGAGAATCCTTACAAAGACAGTGCGGAAATATGTCTAATATTAACAAGGGTTTTGTCTGAATTTGGGGGTTACAAACATCTTTTTTTGTCTTTACACATTTCACAGTTTTTTTTCTTTTTCTTTTTTCTTTCTCTCTTAGGGAGAAAGTAAGTTATTAAAACACCAAAAAGAGAGATGATGGTAGAGCCCAGTGTGGGGTGTTGTAGCCCAAGTTGGGGAGGAGGGAAGCCTGGAGCAGGTGAACACAGGTGGGATGAGATGGGGTCGGCCCTGCATGGCAGGGAGATTCCTGGTCATAATAGAGGGAACTGTGATGTAGAGAGAAGATGCCTTGTACTTGAGAAACCTTGATCTGACACTTACTTGCTTACACTTTTCAAAAGTTTCTTTTAACAATTGAGAAAAACTACCTAGAGTTTTGGGGTTTTGTCTGCTTTAGTCATTACTGTTTGCTAATGGCTTTGTAAACAGCGTTAGGCTAGCGCTGGGCCAGCTCAGGCCTCACTTCTCTCGCCCACACGCCACACCTTCACCCTGTACCTCACGCGTCTGAGCCCTGCAGGCTGGGAGTGTGCGATTGTGTAATTAGCTCTCGGAGCTTTGCTTCACCCCGGTGTTTATGCGTAAGCGTTAGTCACTCAGTCATGTCCGACTCCTTGCAACCCCATGGACTGTAGCCCGCCAGGTTCTTCCATCCATGGGACTTTCCAGGCAAGAATACTGGAGTGGATCGCCATTTCCTTCTCCATTGGTTAACCCAGGTGGTTGTGATCAAACTGAATACATAAAGCCCCAGAGGCTGGCCGGCCCTCCCTTTGCTCAGGTTTTACAAGAAGTCATAAAATATTTCAGTGCTTGCTGGTACAGACACCACCTGAACAGGTAACTTTTTATTGTCTTTCAG
Seq C2 exon
GAAAGAGGATGTGCCTTGGAGAACAATTGGCCAGAACTGAGTTGTTTATTTTTTTTACCTCACTTCTGCAAAAATTTACCTTCAGGCCTCCAGACAATGAAGAGTTAAGCCTGAAGTTCAGAATGGGCTTGACCCTCTCCCCAGTCAGCCATTGCCTCTGTGCTGTTCCTCGGGCCTGAAGTTGTTGGGGAGAGAGAGGGGAAGGAAAGCAGGAAGAATGGGCCTGTCACCCCTCAAGGCACAGGGCCTGCTCAGAAGTGAGAGGACAGCATCCAGTGCCTCTGGGACAGGTCACAGGAGCTGGACTCAGAGGAAACTGGATCCAAACCCCAGCTTTACCGTCTCCAGTGGGGCATTGAGAGAATCAGTGATGTTGTGAGTGATTTCATTTCATCCAGAGGATTTAAAGTGGACAATGATTTCTTCTCTAAAAAGAAGAACTGCTGTAAAAATCAGAGGAAATAATGGGCTTTAAGTGGCTTGGAAACCATAAAGTGCATCATAAAAGTCATAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085:ENSBTAT00000056737:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]