GgaINT0039184 @ galGal3
Intron Retention
Gene
ENSGALG00000011413 | E1BVV4_CHICK
Description
NA
Coordinates
chr8:27486161-27487071:-
Coord C1 exon
chr8:27486933-27487071
Coord A exon
chr8:27486334-27486932
Coord C2 exon
chr8:27486161-27486333
Length
599 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTCCTTGCTCCTCTTCCAGGCA
3' ss Score
11.29
Exon sequences
Seq C1 exon
GGTACCACGCTGATGACCAGCCTGACTTCAATAATGTTTGACAAAAATGTGTGGGAGACTCCAGACACCTTTAATCCTGAACACTTCCTGGAGAACGGCCAGTACAGGAGGCGGGAGGCTTTCCTGCCCTTCTCTGCAG
Seq A exon
GTAGGAAGATGGATGGGGAGATGGTTTTGCTTTTTGTAATGCTTTTTCTTCACCCCCCCCATTGGAGTGGGGGAGAACTGTTCCCAGTCTGATAGCAGCCCGTGCCTGGCACTTCCCGCAGTGAAAATCCCCTAGCAGTTAATACTGACTGCTGTGGGCAGGAGGGAAATCAATTTGTTATTGCAGGATGAAAAATAAGGCTTTTTCCTCCTGTGTGAGCTGTGTAAATGGGTGCTTTTTATTTTTGAGCCCCCCCCCCCCCCCTTTGCTGCTCTGAACGGTTGCATCTCTCTGCTGAGCTGGGAACTTCTGGGGACGCCTTCTGCACGATGTGTGGGTGAACATTGCCACCTAACCTTGCTAGGAAGAAAAGCTCCTGCTGCCTTTGCAATGCAGCATGGGTGAGAGGAGCCTTGATGCTGCAGAGACCCCAAGCCAGTGCCCTTCATCTGCAAGCATTGTCCTTCTCTGTGTCCCATGGCACCAGCAAGCCCACCTATCCCCTTGCACAACACCCTCCCCACTGTAAGAATAGCAATTCAGGGTGATGCTTAAACTCTGCTCTGGACTGAGCATGATTTTCCTTGCTCCTCTTCCAG
Seq C2 exon
GCAAGCGTGCCTGTCCTGGTGAGCAGCTGGCCAGGACTGAGCTCTTCATCTTCTTCACTGCCCTGCTGCAGAAGTTCACCTTCCAGGCTCCATCTGCCACCGTGCTGAGCTTTGCCTTCACGCTCAGCCTCACGCGCTGCCCCAAGCCCTTCCAGCTCTGCGCCCTGCCTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413:ENSGALT00000018621:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.0=100)
A:
NA
C2:
PF0006717=p450=PD(11.7=93.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCACGCTGATGACCAG
R:
GCAGAGCTGGAAGGGCTTG
Band lengths:
300-899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]