HsaINT0044260 @ hg19
Intron Retention
Gene
ENSG00000165841 | CYP2C19
Description
cytochrome P450, family 2, subfamily C, polypeptide 19 [Source:HGNC Symbol;Acc:2621]
Coordinates
chr10:96609674-96612671:+
Coord C1 exon
chr10:96609674-96609815
Coord A exon
chr10:96609816-96612489
Coord C2 exon
chr10:96612490-96612671
Length
2674 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CCTATGTTTGTTATTTTCAGGAA
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGCACAACCATATTAACTTCCCTCACTTCTGTGCTACATGACAACAAAGAATTTCCCAACCCAGAGATGTTTGACCCTCGTCACTTTCTGGATGAAGGTGGAAATTTTAAGAAAAGTAACTACTTCATGCCTTTCTCAGCAG
Seq A exon
GTAATATAAATTTATTTCCCTTTGTGTTTCAGGGTACAAGATAACTTTTTTGATCAGTTGGAACTTACATGTGCCTTCTCTGCAGTGGTACAGTTACTCTTTGTACATGATCAAGAGCACTGTTCTGAATGCCTGTGTTTTCTCCGCTGGTGATACATCCTCATTATTCGGCCAGATTAGTGGGTTTTGGAGAATTAATCCAATTCTTCCAAATTGAGAAAGCTGAAGTATAGGTTGGTTGAATTCTGCCTCTAGATACACCACTGAGGTACTCAAGAACTCCTCCTGGAAGATAAAACTAATTACATTTTCCTCACTAGCCATGAGGAAGTTATCTCACTCCAGAACTTCACTGAGTGTCTTCCACATGGTGTCCCTCACCCCCTAGGCTGGGCTTGTAGGATAAAATTATCCTCAAACACAGAATAGGGTCTTAAGAGGCTCACTTCTGTGTTTGGAAAGCAGAGTAAACAGATCATTGTAGTTCAATAGGACTGAGGCTGTGATATAGAAAAGAACAGGCTGTTGTGGGTTGGGAGGTAGATGGAAAAGCTGTCTGCTTCTTGTTATCTTATAACCCAAAATGAGACATAAGTAACTAATAGCAGTAAAGACATTTAAGCTACATCAAAGGAGTCAGAGAGGATGAAAAGAAGAGAAGGCAGGGCTATTAAAGGAGATAATGAGCCACAGGAGCAGGATATTGGCTCTAAATAAAGGATATTAAAACCTTTGCCAAATAACCATGGATGGGATCAGGGGGACATTAAGAATGTAGCAGGATACTCTGCAGTGATGCAGAGCACCATGCTCTTTCCCTAGTCATGGCAATGTTTTTTGGATGTTTGATCTCCACACGTGAAATGTGTGTGCTGAGCATCTGGTGATAGAATCTCCTTCCTTTTTCTGTGACCTTTGATGTCTGCTTTATATGTGGCACTGTAGATACCAAGATAACAAGGAAAGAAACCTTCCTTCAAGCATTCACATTTAGCACATGTATCAGTCCATTCTTTCATTGCTATAAAGAACCACCTGAGACTGGGTAATTTATGAAGAAAAGAGGTTATTTGACTCACAGTTCCACAGGCTGTACAGGAAGAATGGCTGGGAGGACTCAGGAAACTTGCAGTCATGGTAGAAGGCAAAGAGGAAGCAAGCATATATTTTCATGGAAGAGCAGGAGAGAGAGAGCAAAGAGGAAAGGCTACACACTTTTAAACAACCAGATCTCATGAGAACTCACTCACTATCATGAGAACAGCAAGTGAGAAATCATCCCCTATGATGCAATCACCTTCTACCAGGTATCTCCCCCAACACTGGGAATTAGAATTTGACATGAGATTTGGGTAAGGACACAGAGACAAAGCATACCAGCACACAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGAAATAAGAAATTATGATTCTAGGTGACACATGCTGTCTGTTTCTTCTGCCATATCAAAATACCCAAGACTAGGCAACTGATAAATAACAGAAATTTATTTCTCACAGTTCTGAAGGCTGTGAATTCCAAGATTGAGGTGTCAGCAAGTTCACTGTCTGGTGAGGGCCTGTTCCTTATTGATAATACCCCCTCTGTATCCTCATGTGGCAGAAGCACAAAAAAAGCAAAAGGGGAGAAATGGCTCCCTTGCATCTCTTGGTGTTATTATTTTAGCAAGGACAGAGCCCTCCTGACTTATTCACTGCCTACAAGGCCTCATCACTTTAGTAATGTTGCACTGGGTATTATGTTTCAACATATGAAATGGGGGGAGGAATATTCAGACCATAGCACATTTTTCAATGGAAGCATGAACATGATGTTGAGGAATCCCAGGGAAACGAACATTTTCTTGCTCAGTGAGATGAGAAAGAGAGTAAAAAAGGAGATAAAATTTGACCTATGTCCTGACTGTGGTAATAGAAAAGTTCATCTTGTTCAAAAGGAGAAGCATGATATAAAACTTGAAACCTAGTGTGTTGGGGACTGATGATGAGTGGCTATGCCTAGAGTTGAGAGTAGGGGAGGTGAAGAGTGTAAAATGTGATACGGATCATCAGACTGGAAACAGAATGTGAGGGTCCAGGTCAAGCTATTTGGATCTTATCCCATAGGACAGACAGGGAAGCCATTTAAAGTTTTAAAGTGAGGGGGTAACATGTTTAGACATGTGATTCTGAAAATACTTAGCGGGAAAAAAATCTTTGGCTGCATACTGAGCCAGAAATACAAAGGGAAATGCCGAATGTGAGCCTCCTCCCCTAAGCCCTTCTCAGTTCAACCCACTGGACAGGTAATGTATGTTTCTCAAGAAAGATTTTAATGAATTGCTTGGCATGTAGCTGACAGTCAATAAACATTTGTTGAATACATGGTGCTTGATAAGATCTGAAGATAGGTGAAGAGTAAGCATGTCCATTCATTGTTTAGTTGCCTATCCATCCATTCATCCATTAATCCTTCCACCCATCCATCCTTTCATTCATGCATTCACCCAACCACCCATCTATCTACTCATCCCTCCTATGATTCACCGAACAGTTCTTGCATATTCTGTCTGTGCCAGTTATAGAGACAGTGTTTGTCACTCTCACAGTTACACATGAGGAGTAACTTCTCCCTATGTTTGTTATTTTCAG
Seq C2 exon
GAAAACGGATTTGTGTGGGAGAGGGCCTGGCCCGCATGGAGCTGTTTTTATTCCTGACCTTCATTTTACAGAACTTTAACCTGAAATCTCTGATTGACCCAAAGGACCTTGACACAACTCCTGTTGTCAATGGATTTGCTTCTGTCCCGCCCTTCTATCAGCTGTGCTTCATTCCTGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165841-CYP2C19:NM_000769:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)