MmuINT0044926 @ mm9
Intron Retention
Gene
ENSMUSG00000062624 | Cyp2c67
Description
cytochrome P450, family 2, subfamily c, polypeptide 67 [Source:MGI Symbol;Acc:MGI:3612288]
Coordinates
chr19:39714347-39717910:-
Coord C1 exon
chr19:39717761-39717910
Coord A exon
chr19:39714508-39717760
Coord C2 exon
chr19:39714347-39714507
Length
3253 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CAATTGTTTCCAATCTTCAGGCT
3' ss Score
6.11
Exon sequences
Seq C1 exon
GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG
Seq A exon
GTAAGTGCAGGTCAGATTCTCCTTTTATATCTTATCTTGGTCTATGCATGGCTGTGTATGAGTCATGTTGTTTCTATCTTTTTCTAAGAATATTTTTCTAATGAGATGTCATGAGTATAGGTACCATCATAATTTTAGTGCATTATAAACCATAAATTCCCCTAATCACAAATGTCACTTGTTCTTTGAATACCAGAACGAGAGGGTGATTATCAGTGATAATGGTTACCATGTAAAAGTAAGGAGCATAGACCATGTAGCACTGGTTTTCTTTCTTTCTCTTTCTCTCTCTCTCTCCCCTTCCTTCCTTCTATCCTTCCTTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTCTCTGGCAATGGATAGCACTTGTTCACTGAAGTTTCTAATTGTCCTTCTATAATCTTGTTTGTAGTTCTCGGTAACAGTTGTGTGATGGATTATTTTCATTTCTCAGCTGATTGTAATAGATTTTTATCACTTATTATATCTCTGATTTTATCATGATTTCAATATCTTATTATTTCTTTTTACATAGCATTTCATATTTTTATTCATAAACTTTTCTAAAACACATGTCAACACAAATAGTCAAAATTTATGCACACATGAAAACTAGTAAAATAATTCCTTTAAAAAAACTCAAAACAGTTTCATTGATTCTAGTATTTTCCTATTTGTTTTCAGTTGTTGAAGTCAAATTCACTTTTACAGGTTTTCGGTATGAGAAAGTTGAGCTGCTGGTTGTTACTTTGCTAACACACTTGATGCTACTCACCTAGTGCTTTTAAAGAAAGATTATAATTTTATTTAAATTTCTATATGAAAAGTTTTAGCACTTTTACTTCTAAATACATTAAATCACATACAATCAGATTTTCCATGTGAATGGTATGCACATAAGAAGTAATCTCAAAGTAATTCAGTTCACCCTCATTCCTTAAAATAATGTAATATCTTAGTATATTGTAGGTGTTAAAATCCTGATAGAGCATTAGTAATCTCAAGGAATTCCACATATTTAAGTGTTCATCTTTGTTAACTCATATGACTTTTGATTGAAGGTACACAATTTAAGATCACCTTCAACACAACATCACAAATTTGATCCTTTGATCATAGCAATTTCACTACTGAAATCATTCTCTCATACATTATTGTTTTTGTTTCTGTCATAAAATATCTGGCTTACAAGTTATAGCCACCATTGAGGGAACCAATGCAGGACCTCAAAGAAGGAACCTAGAAGTATTAACTGCAACAGAAAACATGAAGGATAGTTTCTCAGTCACCTATTCCACTTGTCTTTCTCACTTTCTTTTTTCTACTGGCTAGCATCACATGCCTAAGACTTACAATGCCTACAGTGGGTTTAGATAGTGTCCCTATCGTCAGCAATGAAGGAAGAGAACAGAGAGACATGACCTCAGAATCGTTTCCTGGAGCAATTACTCAATTGAGGTTCCTTCTTTTGAGTTGACTGTAGTTTGTGTCAGCTTGACTAAACTACTTGACAAACACTGATTATTTTTCTTACATGTAAAATAAATCTCATGACTAATAGGATACACACGTTATAAACATATTTGTAATGTAATATATTGGTATGTACTTGATATAAAATATCCACACATTTAGGTTTTGCTTAAATATATTAAATGAGATGTTTGGCCATGATGAATATTTATTTTTTATTGAATATTTTATTTATTTATATTTCAAATGATATTCCCTTTCCTGGTTTCCCCTCTGGTAACCCCCTATTCCATTGCCCCTCCCTTTGCTTCTGTGAGGATGCTCCCCAACCATAATATTGAATATTTACTTTCTTTTCAGTGAATGTTATTGTTGCAATTGTACTAGGTGCTGGGTCTAAATTATTCGTATATTTTTGTAATTGTAGCATATGCATTTTGGTTTGCTTGCCATTACAGTATTTTCCTCTTTCATTCCTCCTATTATTCCCAGATACCACATAAATTTTCCTTTATTATACTTTCAAAATGGATATTAAAATAGCATATGTATTTCATAGATTGTAAAATTCAGTGTTTGAAGGATGAACATGCAAAAAGGAAGGGTTCATTTGTTTCATAATAGTGTTTGTCTCACATTATATGGACATTAAAAATAAAGTTCCTTACACCATTTATTCATATAAGTGGATCATGAAATATTTACATACCATAAATTCTGTACATTCTTTCAAAAATCAAAAGAAAAAGAAAAAGGTACCACATGAGACTGTGACAGCAATACAAAAATGAAAAAATAAAAATAAAAAGGGAAAGAATTTAACGTATCTTGAAGGAGATATATCATGCAGACCTTTGAGGGACACACGTCTTCATCAAGTGATCAGAAAAGGTGTGTAAGAAACATGCCATAAAAATCATATCAAAAAGATCTATGTTAAATTTGAATTTTCTATAAAATGTTTGGTATAAGAAAAGGAACAAGTTTATGGGAGTGAGAAATCGATTGTGATGATATTTAACTGGTATATTCTGAGGGTGTCAGTGTACCAAAGGGAGAATGTATGGAATTTAACAACAAAATGAAGAAGTGATATTGATGCAATTTTTGAAAAGATAGATGCAACTTAGCTTAGTAGTGTAATACTGAAAACTTTTCTCCAATCTTAGCTAGAATTGCAACACTTATGGGCAAACCCTGAAGTGTCTTAACATGCTACACCTAATACAAAAAATCTATTAGTGTGAGTGGTCCATGAATAAGCATAGAGACTTCCTGGAAGTCCACACATACACTGGTGTTTGGATGTTTATTGCATGTTTCTTTTGAACACTCATGGGGGACACATTTTTGTCACATTTATATGGTTATAAAAATTAAGATGTTATTGTAGTCATTCTTTAAATCTTGGTTTTGAATAATATATGTTGAAGTAATTGGCTAGATTTTAGGATGTTATGCCATTTAAATTAAGGTCCTTGAATGAAGCAGTGAATATGTTAACTAGTGAGAATGAAAACTAAGTCAGGTTTAATGTCAGCAAGATCACCATTCTTCAGCAGGTAAGTACCTAGCACTTAAGTATATTCATAATTAAATTACTTGGTATAATTTCATAAGTATCTTATCATGTTAACAAGGGCAAATGTATGTGTTTATTTTTAAAGAATTTTACAATTGTTTCCAATCTTCAG
Seq C2 exon
GCTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062624-Cyp2c67:NM_001024719:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: