GgaINT0082264 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFF7]
Coordinates
chr3:108402970-108404212:+
Coord C1 exon
chr3:108402970-108403119
Coord A exon
chr3:108403120-108404051
Coord C2 exon
chr3:108404052-108404212
Length
932 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
ACCGTCTTTTCCTTTGCTAGGGA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTGTTGTATTTTCTAGTGGAGAAAACTGGAAAGTGATGAGAAGATTTACTCTTACAACCTTACGAGACTTTGGGATGGGAAAGAAGGCCATAGAAGACTATGTTGTAGAGGAGTATGGATACCTGGCAGACGTAATTGAGTCACAGAAAG
Seq A exon
GTAGGGAGATTCTTAATTTGATAGCACATATCTGACTTTTCTCAGAAAGTCTTTTAAGGAATACCAAGAATCAAGGAAGAAGAGATACAGACCTCTGTCAGAGATGCATCATTCTCCAATATCAATGCTGTGATGACTATACATGAGTTGCATTTGTCTCCTTGTCTCTCTACCTGGCAATTGCCTGGTGTGTAAATGAAAAGCTTTTATTGAAGTACTGGAATTCAAACACAGAGTTTAATATGTAACAGTACAGTCGAGGAAAAGGACTTCTTATTCCATGTGCAGCATCTCCATAAATGACACACTTTGAGGAGAAACATAGAAGGCAGTTGCAAGGAGGTGCATATCTAGACTGAAAAATTGATTGCCCATAGAAGCATATGTCTGAAAAATGCCTTCCAGTAGGAGACAGAAGATTAATTTGTACATTTCTCCAGCATCATCCAGGATTATTTGTCACTAGGTTCAGTAGCCAACAGCAGGACTTAGAATGGAATCATACAATGATAGAGTGGCTTGGGTTGGAAGGGACCTCTAGAGACAATCTAGTCCAAATTCCTGGGTAAATGTAGGGAAATCTTCCACTAAATCAGGTTGCTCAGAACCCCCAACCAGCCTGGCCTTGTGTACCTCCAGTGATGGGGCACCCACAACTTCTCTAGTCATCCTGTTCCATTGCTTCATCATCCTCACTGTGAAGAATCCCTTCTTTGTATCTAACCTGAAACTACGCTGTTTCCATTTTAAAACACTACTTCGTGTCCTATCACTACATTCCCTTTTAAAAAATCTCTCTCCACTTTTCTTATAAGCCAGCTCTGTGGCTATCATTTCCCAGACTTCAGTGAGACTCTATATGCTATTGTTATATTTTAATTAATTACAATAACCATCGATTGTGTTCTTTGCACCGTCTTTTCCTTTGCTAG
Seq C2 exon
GGAAGCCCCTTGAGATGACTCACTTGATGAATTCTGCTGTTGCTAATGTCATTGTATCCATATTGCTTGGAAAACGGTTTGAATATGAAGACCCCACATTCAAAAGACTTGTGTCACTGATAAATGAAAATATGAGGCTTTTTGGAAGTCCATCAGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690:ENSGALT00000026937:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGAAAACTGGAAAGTGA
R:
TGGACTTCCAAAAAGCCTCAT
Band lengths:
288-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]