GgaINT0082264 @ galGal3
Intron Retention
Gene
ENSGALG00000016690 | F1NFF7_CHICK
Description
NA
Coordinates
chr3:111590561-111591803:+
Coord C1 exon
chr3:111590561-111590710
Coord A exon
chr3:111590711-111591642
Coord C2 exon
chr3:111591643-111591803
Length
932 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
ACCGTCTTTTCCTTTGCTAGGGA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTGTTGTATTTTCTAGTGGAGAAAACTGGAAAGTGATGAGAAGATTTACTCTTACAACCTTACGAGACTTTGGGATGGGAAAGAAGGCCATAGAAGACTATGTTGTAGAGGAGTATGGATACCTGGCAGACGTAATTGAGTCACAGAAAG
Seq A exon
GTAGGGAGATTCTTAATTTGATAGCACATATCTGACTTTTCTCAGAAAGTCTTTTAAGGAATACCAAGAATCAAGGAAGAAGAGATACAGACCTCTGTCAGAGATGCATCATTCTCCAATATCAATGCTGTGATGACTATACATGAGTTGCATTTGTCTCCTTGTCTCTCTACCTGGCAATTGCCTGGTGTGTAAATGAAAAGCTTTTATTGAAGTACTGGAATTCAAACACAGAGTTTAATATGTAACAGTACAGTCGAGGAAAAGGACTTCTTATTCCATGTGCAGCATCTCCATAAATGACACACTTTGAGGAGAAACATAGAAGGCAGTTGCAAGGAGGTGCATATCTAGACTGAAAAATTGATTGCCCATAGAAGCATATGTCTGAAAAATGCCTTCCAGTAGGAGACAGAAGATTAATTTGTACATTTCTCCAGCATCATCCAGGATTATTTGTCACTAGGTTCAGTAGCCAACAGCAGGACTTAGAATGGAATCATACAATGATAGAGTGGCTTGGGTTGGAAGGGACCTCTAGAGACAATCTAGTCCAAATTCCTGGGTAAATGTAGGGAAATCTTCCACTAAATCAGGTTGCTCAGAACCCCCAACCAGCCTGGCCTTGTGTACCTCCAGTGATGGGGCACCCACAACTTCTCTAGTCATCCTGTTCCATTGCTTCATCATCCTCACTGTGAAGAATCCCTTCTTTGTATCTAACCTGAAACTACGCTGTTTCCATTTTAAAACACTACTTCGTGTCCTATCACTACATTCCCTTTTAAAAAATCTCTCTCCACTTTTCTTATAAGCCAGCTCTGTGGCTATCATTTCCCAGACTTCAGTGAGACTCTATATGCTATTGTTATATTTTAATTAATTACAATAACCATCGATTGTGTTCTTTGCACCGTCTTTTCCTTTGCTAG
Seq C2 exon
GGAAGCCCCTTGAGATGACTCACTTGATGAATTCTGCTGTTGCTAATGTCATTGTATCCATATTGCTTGGAAAACGGTTTGAATATGAAGACCCCACATTCAAAAGACTTGTGTCACTGATAAATGAAAATATGAGGCTTTTTGGAAGTCCATCAGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690:ENSGALT00000026937:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGAAAACTGGAAAGTGA
R:
TGGACTTCCAAAAAGCCTCAT
Band lengths:
288-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]