MmuINT1008047 @ mm10
Intron Retention
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:26759341-26762404:+
Coord C1 exon
chr7:26759341-26759490
Coord A exon
chr7:26759491-26762243
Coord C2 exon
chr7:26762244-26762404
Length
2753 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CTTGCCTCCTCATCCTCCAGGAG
3' ss Score
11.19
Exon sequences
Seq C1 exon
GTGTGATCTTTTCCAGTGGGGAACGTTGGAAAACCCTTCGGCGATTCTCTCTGGCCACCATGAGAGACTTTGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATAAAGGAAGAGGCCCAATGTTTGGTGGAGGAACTGAAGAAATACAAGG
Seq A exon
GTGAGTCTTGGAGAGTGGACATAAAGAAGATATGAGGGCACAACCAAAGAAAGAGACACACAAGGGTAGAGAAAGACTGTAGAGACAGAAGAGAGATGAGGGGATGAAGGGTAGATATGGATAAATGTGGAGAGAGAAAAATACAGAGACATAAAAAGAAAAGTGAGGTTTATATTATCCACAAATATCTCAGAGACATAGTTTAACCATGCTGGTCACTTGTATACAGAAAAATCAATCTTTGAATTAATTTTATCTGTCAATTGGGTGTGGTTGGTATATACTTGCCATCTTAGAACTCAGAAGGCTGAGACAAGATGGTCATGAGTTAAAGGCCAGTCCTGTCCACATTGTGAGGTCCTGGCCTACACTGTTGTTGTGGGTGAGTTGGAGAATGCTTCTAGTACCATATATAGTTGTCATGGTGGGGTGTGGCTGTAATCCTTGAAGTCCAGAGGTGGAGGCAGGATGTTGACATTTTCAAGGTCATCTTCTACTACACATAGAGTTCAAGTCCACCTTGGCCTAATCTTCATCATGCCCTCCCTGCCCCACAATGGTCTTAGTCCCATGGTTCTCAACCTTCCTAAAGTTATGACCCTTTAATAAAGTTCCTCATGTTGTGTTAACTCCTCAACCGTAGAAAAATTTTTTGCTACTCCATAGCTGTAATTTTGCTACTATTAGGAAACATAATGTAAATATCTGTGTTTTCTGATGGACTCAGGCATCCCCTGTGTTGTTTGATCTCCAAGGGATCATGACCCACAGGTTGACAACCACTGGTCAACCAAAGGCAAATACAGAGCTTAGGTAAATGAAAATGAAGGAAGCAGGAAGAACTGCAGACATGTTCAAAGCAGAAACTGTGATTTCTCCTTGTTCTTGTGCTGATGGGAATCAGTGAGCACAGAGACTCATGGGAGTTGTAGTTTGGTAGAATTCTCAGGCACTTCTGGGTCCTTCGTGATTCCAAGGGCATCTTGGAGACAGAGACCTTGATTTGTAGCTCCATTTTTTTCACAGCAGGCATTTGTGGTCTCTTATTGACGTTTCTCAGGAGAGCTGAGGTGATGGCAATGCAGAAGCAGGAGAGGAAGAAAGATGCAGAGACTGGGAAAAATGGCTGGAAAGACAAGTCATAGAGATCAAGGATCCAAAGGAAGACAAGTTTTAAGGCTGAGAGTGAAACTGAATAGACTCAGGGAAGGCTCTACAGAGAATCAGAGACTATAGACAAGCCAGTTCCAGGGAGAAAGCAAGAAGGGCCCAATATTGTTGGACAGACAACAAACCTCCAACCACCAGGGTCCATGACTTAACCTGGCCTGCAAAAGACAGCAGGTCCTGATGGCTTCTGAAACACCACAGAGCCAGAAGTCTGAGAAGGGATGAAGACTGGCAGATGGGAGTGGAACATGCAGGGCATGTGAATCCATACAGGCAATCCCTGAACCTTTCTCTGTCCTTTCCTGCCACTGGGAATTAACTATCAGCTCAGAGTCAGAATGGTGACCAGGGAGGAGGTACATTGTGGACACTAACTATACATGCTGTCCCTTGTAGAATTATGGAGTGCCCCACATCTACTCTGCCACAGGGCTCAGGCCACTGGTGGAGGCAGGACCTGGGACTTTAGACTGCACTTAACCCACATGGGTGGGTTCAGGCTATGGGGAAGCCACAAGACACTGTTCCAGGGGGTGGGGGAGCGTAGTCTGAAGTGCAGGACAGCTGGAGCTGGCTTGGGGATCTGTGGCCCTGCAAGGGTCATCTGGTTCTCAGGCTCTTGAACACCGACAGGAGCCTCGGAAGAGCTGAGAACAGAGTGAGGACCCACAGCCTGGATCTAACCCAGGGCCGAAGGGGAAAATAGGGGAGAGCTCCATCTGGGTCCTGTGGGGAGGAGTCCTTGGTTTGTCCAGTGGACAACTGGTTTGGCTTGGTGGAGCACTGAGAGGCCTTCTGTGGGAGATTAGATGGCTGGCTCTTTAGGCGAAGGCCTGGTCCATTGCTCCCCACGGTGGATCCCAATGAAAAGAGGCAGTCCGTGGTTTTAAGACATTTATTGTCACAGAGGAAAGTAGATGAATAAAACCGTACCCCAGTCTCTCAGGGAGGACCTGAGGTTAAATACCTTTTGCAGGAAGGAGTGTCTGGGAAGGGGAGTTTATTGGCCAGGCCTCCAGACCTTTAGGTATCTCATTAAAATGGAGATTTGTCTTGAGGCTATGTTACCTGTGGTCATTTCTTCTACTTGTGGAGGGGCTTAGGGCATTACCCTTACGTGACTGATGGCCACAAATCTATGGAGGGCTGCAGCCTCGTGTCAGGAGCCTAGTATTTAGGAGCATGGCAAACCACCTACCGTACCTGCAGAGTCACCGGGGTTTCCAGCCTGTGCTCAACCAAGAACCAGGCTGCCTTTCACAGTCTTACAGTCCCTCTCAGCTCCTAGGGGTCTGAATGCTGACCCCAGTTGTGAGTAGCTGTGTTCTTAGTGAACTTAGCTTCCCACTCTGTATGCTACCAACACTGCATCTTATGTCCGATATCCTGAGGAAATTAAATAAAATGATGCATTCAGTGCTTAGAACAGGGCTTGGTCCATCATATATGTGCTAGTGAGGTTAGCTACTGTTGCTGTTCTTTGAGTAGTGAGTGGTGTCAGCTGCCTCACAAGATGGAAATAAATTCAAATATCCCCATGGTCCTATATCTCCTGTCTCCTGTCTTGCCTCCTCATCCTCCAG
Seq C2 exon
GAGCCCCTCTGAACCCCACCTTCTACTTCCAGTGCATCGTAGCAAATATCATCTGCTCCATTGTCTTTGGAGAGCGCTTTGACTACAAAGACCACCAATTCCTGCATCTGCTAAATCTGATCTACCAGACATTTTCCCTCATGAGCTCATTGTCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704:ENSMUST00000077855:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types